Pseudoalteromonas shioyasakiensis: KQ246_18260
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Entry
KQ246_18260 CDS
T08873
Name
(GenBank) helix-turn-helix domain-containing protein
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
psho
Pseudoalteromonas shioyasakiensis
Pathway
psho03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
psho00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
KQ246_18260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
psho03000
]
KQ246_18260
03400 DNA repair and recombination proteins [BR:
psho03400
]
KQ246_18260
Enzymes [BR:
psho01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
KQ246_18260
Transcription factors [BR:
psho03000
]
Prokaryotic type
Helix-turn-helix
AraC family
KQ246_18260
DNA repair and recombination proteins [BR:
psho03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
KQ246_18260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HTH_AraC
DUF6233
HhH-GPD
HTH_ABP1_N
Motif
Other DBs
NCBI-ProteinID:
QWV06985
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Position
megaplasmid:173214..174563
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AA seq
449 aa
AA seq
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MTSQQWQTARQSRDPRFDGVFFVAVKSTGIYCRPICPAPTAQEKNVEYYQYAHLAAQDGF
RPCIRCRPDSAPNSPAWLGTKTTALRAKQLIDKGEAYDCEVLADRVGVSSRYLRRLFNQH
FGLSITQYRLFNQCNFAKQLLQETDLSVADIAFASGFNSIRRFNDAFLKQLNIAPSKLRK
SDKKPASTLTLTLAFRPPYNWQALHDFLQRRLISGLEWLSTTSYGRTFKDKYCQGQFTAH
FVEHKNHFKVAIDIDNTRYLQQVIHNIRRVLDLDADTHTIEQHLDAELKGSMPLCVGLRL
PGIWSDYEAGIRAVLGQQVSVTAAHNLVSQLVSEFNQQSNNHYFPSPEWVANSELDFFKM
PQSRKDALRRLGAYCQQNPDNQELDNWLELKGIGPWTVNYAKLRGQSHPDILLAGDLGVK
KALAGISEFNSEHCAPFRSYLTFQLWQQL
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atgactagccaacaatggcagactgcaaggcaaagccgcgatccacgatttgatggggtg
ttttttgtggcggtaaaaagtactggtatttattgcagaccaatttgccccgcaccaacg
gcacaagaaaagaacgttgaatattaccaatacgcgcacttagctgcgcaagatggtttt
cgaccctgtattcgctgtcgcccagatagtgcaccaaatagcccagcttggctaggtact
aaaaccaccgcattacgcgccaaacaactgattgataaaggtgaggcctacgactgtgag
gttttagcagacagagtcggggtgtcgagccgctatttacgccgtttgtttaaccaacat
tttggactgtcgatcacccaatatcgattatttaaccaatgcaatttcgccaagcagcta
ttacaagaaacagatttgtcggtggcagatatcgcatttgcttctggctttaatagtatt
cgtcgctttaacgatgcttttttaaagcagttaaatatcgctccttcaaagttacgtaag
tcagataaaaaaccagcctcaacattaactctaacactggcatttaggccgccttataac
tggcaagcactccatgactttttgcagcgccgtttaatcagtgggttagaatggttgagc
acaacaagctatggtcgcacttttaaagataaatattgccaagggcaattcactgcgcat
tttgttgagcataaaaaccactttaaagtggcgattgatattgataacacccgctattta
cagcaagtgatccataacattcgtcgtgtgcttgatttagacgccgatacgcataccata
gaacagcatttagatgcagagcttaaaggatcaatgccgctttgtgttggcctgcgttta
ccggggatttggtcagattatgaagcgggcatacgagcggtccttggtcagcaggttagt
gttacagcggctcataaccttgtgtcacagcttgtgagtgagtttaatcagcaaagtaat
aaccactattttccaagccctgaatgggttgccaattctgaactcgatttttttaaaatg
ccacaatcacgcaaagatgcgctacgtcgtttaggtgcttattgtcagcaaaacccagat
aatcaagagcttgataattggttagagctcaaaggtattggcccatggacagttaattac
gccaaactacgcggtcaaagccaccccgatattttactggcgggcgacttaggggttaaa
aaagccctcgctggaataagcgaatttaatagcgagcactgtgcgccatttcgctcttat
ttaacttttcaactatggcaacaattatga
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