KEGG   Pseudoalteromonas shioyasakiensis: KQ246_18475
Entry
KQ246_18475       CDS       T08873                                 
Name
(GenBank) sigma-54 dependent transcriptional regulator
  KO
K10126  two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD
Organism
psho  Pseudoalteromonas shioyasakiensis
Pathway
psho02020  Two-component system
Brite
KEGG Orthology (KO) [BR:psho00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    KQ246_18475
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02022 Two-component system [BR:psho02022]
    KQ246_18475
Two-component system [BR:psho02022]
 NtrC family
  DctB-DctD (C4-dicarboxylate transport)
   KQ246_18475
SSDB
Motif
Pfam: Sigma54_activat Response_reg Sigma54_activ_2 AAA_5 HTH_8 AAA_2 AAA_3 AAA_16 AAA AAA_7 DUF2374 Mg_chelatase FleQ HTH_50
Other DBs
NCBI-ProteinID: QWV07021
LinkDB
Position
megaplasmid:216887..218257
AA seq 456 aa
MSVVATTCNQVIVIDDEAVIRDSLKQLLEIEGYQVQCFSEPTAALSKLGRRFEGIVLSDI
NMPKMDGLEFLEQVKAFDSELPVIFLTGFADVSVAVKAMQLGAYDLFEKPLTEQLLDCIA
RASEKRALVMENRALKIAVEKTSAPGVRILGETEQMQQMMHLLNAVIDTPADVLIEGETG
TGKELVARYLHDQSNRSAANFVAINCGAIPEQLIESELFGAASGAYTGATQSRQGKFEFA
KGGTVFLDEIESTPASLQVKLLRVLEERKVTPVGDNHAIDLDVRIVAATKVDLMTLVEAG
EFRADLYYRLNLVKVSIPALRDRKADIPLLFKHFSSIAATRFHKPPAPLSSEAKQRLLAY
DWPGNVRELRNQAERAVLLGSDLAFASYNDANNENELAQDLSLAEKISFYEQSLIEEALE
RNNGSIKDTMVTLQIARKTLYDKMTKYGINREMFKD
NT seq 1371 nt   +upstreamnt  +downstreamnt
atgagtgtagttgcaactacctgtaatcaggtaattgttattgatgacgaagcggtgatc
cgcgattcattaaagcaactgcttgaaattgagggttatcaagttcagtgttttagcgaa
ccaacagctgcactttcaaaactgggtcgtcgttttgagggaattgtgcttagcgacata
aatatgccaaaaatggatggtttggagtttttagagcaagtaaaagcgtttgatagtgaa
ctgccggttatatttcttactggttttgctgatgtatctgttgcggttaaagctatgcag
ttaggggcttatgatttatttgaaaagccgcttactgagcaattgttagattgtattgcg
cgtgcttcagaaaaacgggctttagtgatggaaaaccgcgccttgaaaattgcggtagaa
aaaacttctgcgcccggtgtgcgtattttaggtgaaacagagcaaatgcaacaaatgatg
catttacttaatgctgtaattgatactcccgccgatgtgcttatagaaggtgaaacaggt
acaggtaaagagttagttgctcgttacttgcacgatcaaagtaacagatcagcggctaat
ttcgtagcgataaactgtggtgcaattcctgagcaattaattgaaagtgagttatttggg
gcggcaagtggggcttacaccggtgcaacgcaatctcgccaaggtaaatttgaatttgct
aaaggaggtaccgtttttttagatgaaatagagtcaacgcctgcaagtttacaagtcaag
ttacttagggtgcttgaagagagaaaagtcacacctgtaggcgacaaccacgccattgat
ttagatgtacgcattgttgctgctacgaaagttgatttgatgaccttggtagaagcaggt
gagtttagagccgatctttattatcgattaaacttagttaaagtgagtattcctgcatta
cgcgatagaaaagccgatattccattactttttaaacactttagctcaattgctgcaaca
cgctttcataagccacctgcaccacttagtagtgaagcaaaacagcgactacttgcttat
gattggccaggtaatgtgcgagaacttagaaatcaggccgaacgtgcagtattgctaggc
tctgatttagcatttgcttcatacaacgacgcaaacaatgagaacgaacttgctcaggac
ctaagcctagctgagaaaatcagcttttatgagcaatcactgattgaagaggcgttagag
cgtaacaacggtagcattaaagatactatggtcactttacaaattgctcgtaaaaccctt
tacgacaagatgactaaatacggtattaaccgggaaatgtttaaagactaa

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