Pseudooceanicola spongiae: F3W81_04065
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Entry
F3W81_04065 CDS
T06866
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
pshq
Pseudooceanicola spongiae
Brite
KEGG Orthology (KO) [BR:
pshq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pshq03016
]
F3W81_04065 (rnd)
Enzymes [BR:
pshq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
F3W81_04065 (rnd)
Transfer RNA biogenesis [BR:
pshq03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
F3W81_04065 (rnd)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
QOL80069
UniProt:
A0A7L9WIK9
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All DBs
Position
862085..863245
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AA seq
386 aa
AA seq
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MQTITSTEGLAAFCEQAKSHPYVTVDTEFLRERTYYSQLCLIQLAFPGPEATCAAIVDPL
AEGLSLEPLYDLFRDTSVVKVFHAARQDLEIFFVDAGLIPEPLFDTQVAAMVCGFGEQVG
YETLVRKIAHHPLDKSSRFTDWSRRPLSDAQLKYALADVTHLREIYEYLAKQIKKAGREK
WVEEELGILTSPDTYIVQPDEAWQRVRTRTSSGRFLAILRELAKFRESFAQTRNVPRNRV
YKDDAMVELASTKPLNAQDLSRSRLLLREARKGEIADGIIAAVKAGMECPDSDLPRPDMS
AEKLQVNPALADLLRVLLKAKSDTAGVAAKLIAATSELDALAAGLRDVPSLHGWRRDVFG
ADALRLCDGEIGLATKGQKVVTVDLR
NT seq
1161 nt
NT seq
+upstream
nt +downstream
nt
atgcagacgattaccagtaccgagggcttggcggccttctgcgagcaggcaaaatcccat
ccttacgtcactgtcgacaccgagtttctgcgcgagcgcacgtattactcccagctctgc
ctgattcagttggcttttcccggtccggaggccacctgtgccgcgatcgtcgatccgctg
gccgaagggctgtcgcttgaacccctgtatgacctgtttcgcgatacctctgtcgtaaag
gtgttccacgccgcacgtcaggatcttgagatcttctttgtcgatgcgggtctcatcccc
gaacccttgttcgacacgcaggttgcggccatggtctgcggctttggtgaacaggtcgga
tacgagactctggtgcgcaagatcgcgcatcatccgctcgacaaatcctcgcgctttaca
gactggtcgcgccgtccgctgagcgatgctcagctgaaatacgcgctggctgatgtcacc
cacctgcgcgagatttacgaatacctcgccaagcagatcaaaaaagcaggccgcgaaaag
tgggtcgaggaagaattgggcattctgaccagtcccgacacctatatcgtgcagcctgac
gaggcctggcaacgggtgcgcacccgcacgagttcgggacgcttcctggccatcctccgc
gagctggccaagttccgcgagagttttgcccagacgcgcaacgtgccgcgcaaccgtgtc
tacaaggacgacgccatggtggagctggcctcaaccaaacccctgaatgcgcaggatctg
tcccggtcgcgtctgttgctgcgcgaggcccgcaagggcgagatcgccgatggcatcatc
gccgccgtcaaagctgggatggagtgccctgacagcgatctgccgcgtcctgacatgtcg
gcggagaaactgcaggtcaacccggcgctggcagatctgctgcgtgtcttgttgaaagcc
aagtccgacacggcgggtgtagcggccaagctgattgcagcgacctctgagctggatgcg
ctggcggcgggtttgcgcgatgtgccgtcgttgcatggctggcgtcgggatgtatttggg
gctgacgccctgcgcctctgcgatggagagatcggtctggccaccaagggccagaaagtc
gtcaccgtcgatctgcgctaa
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