Pseudooceanicola spongiae: F3W81_04655
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Entry
F3W81_04655 CDS
T06866
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pshq
Pseudooceanicola spongiae
Pathway
pshq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pshq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
F3W81_04655 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pshq03400
]
F3W81_04655 (mfd)
Enzymes [BR:
pshq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
F3W81_04655 (mfd)
DNA repair and recombination proteins [BR:
pshq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
F3W81_04655 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
UvrB_inter
ResIII
MFD_D3
Cas3-like_C_2
AAA_30
UB2H
AAA_16
SecA_DEAD
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QOL80174
UniProt:
A0A7L9WK10
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All DBs
Position
complement(995509..998982)
Genome browser
AA seq
1157 aa
AA seq
DB search
MANKTHITLGGAPEGFDAALLIAEAHKSAGPVVHIARDDKRLAAMVDALHFFAPDIPVLT
FPAWDCLPYDRVSPNADISAMRMATLAGLVHGMPSRFILLTTMSAATQKVPAREVLRDAA
FTARVGDRIDEKALRNFLVRMGFSQSNAVTEPGDYALRGGIIDIYPAGSGGPVRLDLFGD
VLDGARRFDAATQRTTDKLDVIELAPVSEVILDDAAITRFRQNYRIEFGAAGTDDPLYEA
VSAGRKQQGIEHWLPFFHERLETLFDYLPDATITLDDQVTPARLSRWDTITDQYETRRIA
LGQKGRMDSVYKPVPPALLYLTDAAWEAAIGARRVIQLSPLPQSPGVNVLDAGGRQGRNF
SPERQLENINLFSALADHIRAKLHDGPVVVASYSEGARERLEGLIEDEGLGGAVSLNDAS
RLGKTGLHLAIWPLEHGFTGKWRDRALTVISEQDVLGDRLIRGARKRKRAENFLTETQSL
STGDLVVHVDHGIGRYHGLEVITAAGAAHECILLEYAENARLYLPVENIELLSKYGHEEG
FLDKLGGGAWQAKKARLKERIREMADKLIRVAAERALRRAPIMDPPSGEWDAFQARFPYQ
ETDDQLSAIHDVLTDMESGHPMDRLICGDVGFGKTEVALRAAFVAAMSGAQVAVIAPTTL
LARQHYQGFAERFRGFPIEVNALSRFVSASDATRTRAGIADGTVDIAVGTHALLAKGINF
RNLGLLIIDEEQRFGVSHKERLKQMRSDVHVLTLTATPIPRTLQLSLSGVRDLSIIGTPP
VDRLAIRTYVSEFDAVTVREALLREHYRGGQSFFVVPRLSDLPEIEEFLKTQVPEVSFVV
AHGQMAAGDLDKRMNAFYDGKYDVLLATTIVESGLDIPRANTMIVHRADMFGLAQLYQIR
GRVGRAKTRAYAYMTTTPRMKLTDAAQKRLRVLSSLDTLGAGFTLASQDLDIRGAGNLLG
EEQSGNMRDVGYELYQSMLEEAIAKIRSGELEGLTESDGQWAPQLNLGVPVLIPEDYVPD
LDLRLGLYRRLSSLSKKVELEGFAAELIDRFGKLPKEVNTLLLVVRIKAMCKRAGIAKLD
AGPRGATIQFHNDKFASPEGLVAFIRDQGGTARVKDNRIVLQSDWKSDGERIKGAFAIAR
DLAEIVVTKEKKAKARS
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atggccaataaaacgcatatcaccctcggcggtgcgcccgaggggttcgacgccgctctg
ttgatcgcagaggcccacaaaagtgctggtcccgtcgtgcatattgcacgtgatgacaag
cgcttggccgccatggttgatgcgctgcacttctttgcgcccgacatcccggtgctgaca
tttccggcctgggactgtctgccctatgaccgggtttcgcccaatgccgatatctcggcg
atgcggatggcgacgctggcgggactggtgcacggcatgcccagccggttcatcctgctg
acgacaatgagcgccgcgacccagaaagtgcccgcccgcgaggtgctgcgcgacgccgcc
ttcaccgcccgcgttggcgaccggatcgacgaaaaagccctgcgcaatttccttgtccgc
atgggcttttcgcagagcaatgcggtcacggagcccggcgattacgcgctgcgcggcggg
atcatcgacatctatcctgcgggcagtggcgggccggtgcgcctcgacctgttcggcgat
gttctggacggcgcacgccgctttgatgcggccacgcagcgcaccactgataagctggat
gtcattgaacttgctccggtttccgaagtcattctggacgatgccgcgatcacccggttc
cgccagaactatcgcatcgagtttggcgctgccggcaccgatgacccgctgtacgaggct
gtcagcgccgggcgcaaacagcaggggatcgagcactggctgccgttctttcatgagcgg
ctcgagacgctgttcgactacctgccggacgcgaccatcacgctggacgatcaggtcacc
ccggcgcggctgtcgcggtgggacacgatcacggaccaatacgaaacccgccgcattgcc
ctggggcaaaaggggcgcatggactcggtctacaaaccggtgccgccagcgctgctctat
ctgacggatgccgcatgggaggcggcgattggcgcgcgtcgggtgatccagctgtcgccc
ttgccacagtcgccgggggtgaacgttctggatgccggagggcgtcaggggcgcaatttc
tcacccgaacggcagcttgaaaatatcaaccttttcagcgctctggcagatcatattcgt
gcgaaacttcacgacggtccggtggtcgttgcgtcctattccgagggcgcgcgagagcgt
cttgaagggctgatcgaggacgaagggctgggcggtgctgtgtcgctgaatgatgcctct
cgcctcggcaagaccgggctgcatcttgcgatctggccattggagcacgggttcactggc
aagtggcgcgaccgcgccctgacggtgatttccgagcaggacgttctgggcgaccggctg
atccgcggcgcacgcaagcgcaagcgggccgagaatttcctgaccgaaacgcagagcctg
agcacaggcgatctggtggtccatgtggatcacggcatcgggcgctatcatgggctggaa
gtgatcaccgccgccggcgcagcgcatgagtgcattctgcttgaatatgctgaaaacgct
cggctttatttgcccgtcgagaatatcgaactgctctcgaaatatggccacgaggaaggc
ttcctcgacaagctgggcggtggcgcctggcaggccaagaaggcccggctgaaagaacgc
atccgcgagatggccgacaagctgatccgcgttgccgccgaacgcgcgctgcggcgagcg
ccgatcatggacccgccctcaggcgaatgggacgcgtttcaggcgcgttttccctaccag
gagaccgatgaccagctgagcgccattcacgatgtgctgacggatatggagtccggccat
ccgatggatcggctgatctgcggtgacgtcggctttggcaagaccgaggttgcgcttcgg
gcggcctttgttgccgcgatgtccggcgctcaggtcgccgtaattgccccgacgaccctg
ctggcccgccagcactatcagggatttgccgagcggtttcgtggatttccgattgaagtc
aatgcattgtcgcgctttgttagcgcatcggacgcaacgcgcacccgcgctggcattgcc
gatggcactgtcgatattgcggtcggcacgcatgcgctgctggccaaggggatcaacttc
cggaacctcggcctgctgatcatcgacgaagagcaacgcttcggggtgtcgcataaggaa
cgtctgaagcagatgcgctctgacgttcatgtgctgacgctgacggcgacgccaatcccg
cggacgctgcaactcagcctgtctggtgtgcgtgacctttccatcatcgggacgccgccg
gtcgaccgtctggcgatccgcacctacgtcagtgaattcgatgccgtcaccgtacgcgag
gccctgttaagagagcattatcgtgggggccaaagcttcttcgtggtgccacggctgagc
gatcttcccgagatcgaggagtttctgaaaacgcaggtgcctgaggtcagcttcgttgtg
gcgcacgggcagatggcggcaggcgatctcgacaagcggatgaacgcgttttacgatggg
aaatacgatgttttgctggccacgacgatcgtggaaagcggcctcgacatcccgcgcgcc
aatacgatgatcgtgcaccgcgcggatatgttcggcctcgcgcagctctaccagatccgt
ggccgcgttggccgcgccaagacccgcgcctatgcctacatgacgacgacaccgcgtatg
aaactgacggatgccgcgcagaaacgactgcgggtgctgagcagtctcgacacgctgggc
gccggatttacgcttgcatctcaagaccttgatattcgcggcgccggcaatttgctgggc
gaggagcagtcgggcaacatgcgggacgttgggtatgagctgtaccagtcgatgctggag
gaggcgattgccaagatccgctccggagagctggaaggcctgaccgagagcgatgggcaa
tgggcgccgcagctgaacctgggtgtgccggtgctgatccccgaagactatgtgccggat
ctggacctgcggctggggctctatcggcgcctctcaagcctgtcgaagaaggtcgagctg
gaagggttcgcggctgaactgatcgaccgttttgggaaattgcccaaggaggtcaatacc
ttgctgctggttgtccggatcaaggcgatgtgcaagcgggccgggatcgccaagctggac
gcggggccgaggggggccacgatccagttccacaacgacaagttcgcaagccctgagggg
ttggtggccttcatccgcgatcagggtggcacggcacgggtcaaggataaccgtatcgtg
ctgcaaagcgactggaaaagcgatggagagcggatcaagggtgcctttgcgatcgcccgg
gatctggcggaaattgtggtgaccaaagagaagaaggcgaaggcccgcagctga
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