Pseudooceanicola spongiae: F3W81_10290
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Entry
F3W81_10290 CDS
T06866
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pshq
Pseudooceanicola spongiae
Brite
KEGG Orthology (KO) [BR:
pshq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pshq03032
]
F3W81_10290 (topA)
03400 DNA repair and recombination proteins [BR:
pshq03400
]
F3W81_10290 (topA)
Enzymes [BR:
pshq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
F3W81_10290 (topA)
DNA replication proteins [BR:
pshq03032
]
Prokaryotic type
DNA Topoisomerases
F3W81_10290 (topA)
DNA repair and recombination proteins [BR:
pshq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
F3W81_10290 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
HC2
Extensin_1
Toprim_4
CARME
Motif
Other DBs
NCBI-ProteinID:
QOL81165
UniProt:
A0A7L9WL88
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All DBs
Position
2176575..2179256
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AA seq
893 aa
AA seq
DB search
MPVVVVESPAKAKTINKYLGSDYVVLASYGHVRDLPPKDGSVDTENDFEMLWEVGADSRK
HVKAIADALKEDNNLILATDPDREGEAISWHLEETLRKRKAIKADTPVSRVVFNAITKSA
VTEAMKNPRQVDAPLVEAYLARRALDYLVGFNLSPVLWRKLPGAKSAGRVQSVCLRLIVE
REMEIEVFRAREYWTVKAILTTPRGQEYEARLTMLGGDKLDRYSLENQTAAEMAVQAITS
RDLTVASVEAKPASRNPSPPFMTSTLQQEASRKFGMGARQTMSAAQRLYEAGHITYMRTD
GIDMAPEAVTAARDAIKERYGAEYVPSSPRVYKNKAKNAQEAHECIRPTEMTKDAAALKI
TDADQRKLYDLIWKRTLACQMEGARMERTTVDITSADHQVELRATGQVVIFDGFLRVYEE
GKDDAVVDDDDNRLPQISQGEPAKKKTITPDQHFTQPPPRYTEATLVKRMEELGIGRPST
YASIVTTIQDRGYVRMDKSRMIPEDKGRLVIAFLSNYFHKYVEYDFTADLEGELDDVSAG
ERDYKDVLKRFWRDFHAAIEETSELRITDVLEKINEVLEPHLFPDAGDGSDPRLCPNCGQ
GRLSMRTARSGGAFIGCSNYPECRFTRPFGPPGAEGSSIGPDGKLLGHDNDDPISLRDGR
FGPYVQRGNATEEVPKPPRASLPKGWEVDSIDLEKALTLLNLPRQIGAHPEDGEMIEAGI
GRFGPFVKHNKTYANLANVDEVFEVGMNRAVELLAQKLARGGRGQAAKPLKELGEHPELG
GPVNVMTGRYGPYVKWEKINATLPNDVEPEGLTMEAAVELINEKAAKSGKKPARKAPAKK
PAAKKATTKAATTKAATTKTAAKKTTAKKPAAKKAPAKKPAAKKPEAPPEDGE
NT seq
2682 nt
NT seq
+upstream
nt +downstream
nt
atgcccgttgttgttgtggaatccccggctaaggccaagacaatcaacaaatatctgggc
tccgattatgtcgtcctcgcctcgtatggccacgtccgcgacctgcctcccaaggacgga
tcggtggataccgagaacgatttcgagatgctctgggaggtcggcgccgacagtcgcaaa
catgtgaaggccattgccgacgccctgaaagaagacaacaacctgatcctcgcgaccgac
cctgatcgtgagggagaggcgatttcctggcacctggaagagacgctgaggaagcgcaag
gcgatcaaggctgacacccccgtcagccgcgtggtcttcaacgccatcaccaaatccgcc
gtcaccgaggcgatgaagaacccgcgtcaggtcgacgccccgctggtcgaggcgtatctc
gcccgccgcgcgctcgactaccttgtcggtttcaacctctcgcccgtgctctggcgcaag
ctgcccggcgccaagtccgctggccgcgtgcaatcggtctgcctgcgtctgatcgtcgag
cgcgagatggagatcgaggtcttccgtgcccgtgaatactggaccgtgaaggccatcctg
acgacgccgcgcggtcaggaatacgaagcccggctgaccatgctcggcggtgacaagctc
gaccgctattcgctcgaaaaccaaaccgctgccgagatggcggtgcaggccatcacttcg
cgcgatctgactgtcgcctcggtcgaggccaagcccgcctcgcgcaatccctcgccgccc
ttcatgacctcgaccctgcagcaggaagccagccgcaagttcggcatgggtgcccgccag
acgatgagcgcggcgcagcgcctctacgaggctggccacatcacctatatgcggaccgac
ggcatcgacatggcccccgaggccgtgaccgccgcccgtgacgcgatcaaggaacggtac
ggcgcggaatatgtgccctccagcccccgcgtctacaagaacaaggccaagaacgcgcag
gaagcgcacgaatgtatccgcccgaccgagatgaccaaggacgccgccgcgctcaagatc
accgatgcggatcagcgcaagctctatgacctgatctggaagcgcacgctggcctgtcag
atggagggtgcgcggatggagcggaccaccgtcgacatcaccagcgccgatcaccaagtc
gagctgcgcgccaccggccaggtggtcattttcgacggctttctaagggtttacgaagag
ggcaaggatgacgccgtcgtcgatgacgacgacaatcgcctgccccagatcagtcagggc
gaaccggcaaagaagaaaacgatcacgcccgaccagcacttcacccagccgccgccgcgc
tataccgaagcgacgctggtcaagcgcatggaagagctcggcatcggccgcccctcgacc
tatgccagcatcgtcacgaccattcaggaccgtggctatgtccgcatggacaagtcgcgg
atgatcccagaggacaaggggcggctcgtcatcgcctttctgtcgaactattttcacaag
tacgtcgagtatgatttcaccgccgatcttgagggcgagctcgatgacgtttcggcgggc
gagcgggactacaaggatgttctgaaacgcttctggcgcgatttccacgcggcgattgag
gaaacctccgagctgcgcatcaccgacgtgctggagaagatcaacgaggttctggagcca
catctgttccccgatgcaggcgacggcagcgatccgcgcctgtgcccgaactgtggtcag
gggcgtctgtcgatgcgcactgcgcgctctggcggggccttcatcggctgctcgaactac
cccgaatgccgctttacccggcccttcggccctcccggtgccgagggcagctcgatcggg
ccggatggcaagctgctcggccacgacaacgacgatccgatcagcctacgcgatggtcgc
ttcggcccctacgtgcaacgcggcaatgccaccgaagaagtgccgaaaccgccgcgcgct
tcgctgcccaagggctgggaagtcgattccatcgacctggaaaaggcgctgacgctgctg
aacctgccgcgccagatcggcgcgcacccggaagatggcgagatgatcgaggccgggatc
ggccgctttggccccttcgtgaaacacaacaagacctatgcgaaccttgccaatgttgat
gaggtcttcgaggtcggcatgaaccgcgcggttgagctgctggcgcagaagctggcgcgt
ggcggtcgtggccaagcggccaagcccttgaaagagctgggcgaacaccccgagctcggc
ggaccggtcaacgtcatgacggggcgttacgggccttacgtgaagtgggaaaagatcaac
gccacgctgcccaacgacgtcgagcctgaaggcctgacgatggaagccgccgtcgagctg
atcaacgaaaaggccgcaaaatccggcaagaagcctgcgcgcaaagccccagccaagaaa
cctgcggcgaaaaaagccacaaccaaagcggcgacgactaaggctgcgacgaccaagaca
gcggccaagaagacgacagcgaaaaagcctgcagccaagaaagctccggccaagaaacct
gccgcgaaaaagcctgaggccccgcccgaggacggcgaataa
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