Pseudooceanicola spongiae: F3W81_16220
Help
Entry
F3W81_16220 CDS
T06866
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pshq
Pseudooceanicola spongiae
Pathway
pshq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pshq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F3W81_16220 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pshq03019
]
F3W81_16220 (pnp)
03016 Transfer RNA biogenesis [BR:
pshq03016
]
F3W81_16220 (pnp)
Enzymes [BR:
pshq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
F3W81_16220 (pnp)
Messenger RNA biogenesis [BR:
pshq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
F3W81_16220 (pnp)
Transfer RNA biogenesis [BR:
pshq03016
]
Prokaryotic type
tRNA degradation factors
F3W81_16220 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
QOL82241
UniProt:
A0A7L9WPK3
LinkDB
All DBs
Position
complement(3454010..3456139)
Genome browser
AA seq
709 aa
AA seq
DB search
MFNVTTKSIQWGDETLTLETGKVARQADGSVIATLGETSVMANVTFAKKQKEGQDFFPLT
VHYQEKYYAAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSH
DLENDPDVVAMIAASAALTISGAPFMGPIAGCRVGFSNGEYKLNPSVDDMQGLRNNPEQR
LDLVVAGTKDAVMMVESEAYELSEEEMLGAVTFAHEQIQPVIDMIIDLAEDCAKEPFDFT
PPDYSALYNAVKAAGEDKMRSAYAILDKQERTTAVAAAKDAIKATLSEEQLADGNLPSAL
KKLESGVLRGDVVKHGRRIDGRATDQVRDIVAETGILPRTHGSALFTRGETQGLVVTTLG
TGDDEQFIDALHGNFKSNFMLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAVLPA
STDFPYTIRIVSEITESNGSSSMASVCGGSLSMMDAGVPLKAPVAGVAMGLVMEDDGSYA
ILTDILGDEDHLGDMDFKVAGTEDGITSLQMDIKVQGITPAIMQKALAQAKAGRLHILGE
MNKALSGVGEFSVHAPRIETMQIPTDKIREVIGSGGKVIREIVELSGAKVDINDDGVIKI
ASANGEAIQKAYDMIYSIVAEPEEGKIYKGKVVKIVDFGVFVNFFGKRDGLVHVSQIENR
RLNHPSDVLKEGQDVWVKLVGFDDRGKVRLSMKMVDQTTGEESAEEVTE
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgttcaacgttacgacgaaatcaattcagtggggcgacgagacgctgacactggaaacg
ggcaaggttgctcgtcaggcggatggctcggtcatcgccaccctgggcgaaacgtcggtc
atggccaacgtgactttcgccaagaaacagaaagagggccaggatttcttccccctcact
gtgcactaccaagagaaatattatgcggccggtaaagtgccgggcggcttcttcaaacgc
gaagcccgtcccaccgagaaagagacgctgactgcgcgtctgatcgaccgtccgatccgc
cccctgttcgtccccggcttcaagaacgaagtcctggtgatgtgcaccgtcctgagccac
gacctggaaaatgaccccgacgtcgttgccatgatcgctgcctcggccgcgctgacgatc
tctggcgcccccttcatgggcccgatcgctggctgccgcgttggtttctccaacggcgaa
tacaagctgaacccgagtgtcgacgacatgcagggcctgcgcaacaaccccgagcagcgt
ctcgatctggttgtcgccggcaccaaagacgccgtcatgatggtcgaatccgaagcctac
gagctgagcgaagaagagatgctcggcgccgtgaccttcgcgcatgaacagatccagccc
gtgatcgacatgatcatcgacctggccgaagactgcgcgaaagagcccttcgacttcacc
cccccggattactcggcgctctacaacgccgtgaaagccgctggcgaagacaagatgcgc
tcggcctatgcgatcctcgacaagcaggagcgcacaaccgctgttgccgctgccaaggac
gcgatcaaggcgacgctctcggaagagcagctggcggatggcaacctgccctccgctctg
aagaagctggaatccggcgttctgcgcggggatgtcgtcaagcacggccgccgtatcgat
ggccgcgccaccgatcaggtccgcgatatcgttgccgaaaccggcatcctgccgcgcacg
cacggttcggctctgttcacccgtggggaaacccagggcctcgtcgtgaccactctgggc
accggcgatgacgagcagttcatcgacgcgctgcacggcaacttcaaatccaacttcatg
ctgcactacaacttcccgccgtattcggttggcgaagttggccgcgtgggttcgcccggt
cgtcgtgaaatcggccacggcaaactggcatggcgcgcccttcaggccgttctgcccgcc
tcgaccgatttcccctacacgatccgcatcgtgtcagagatcactgaatccaacggctcc
tcctcgatggcgtcggtctgcggcggttcgctgtcgatgatggatgcaggcgttcccctg
aaagcaccggttgccggtgtggccatgggtctggtcatggaagacgacggctcctacgcc
atcctgaccgacatcctgggcgacgaagatcacctcggcgacatggacttcaaagtggcc
ggtaccgaagacggtatcacgtcgctgcagatggacatcaaagtgcagggcatcaccccc
gcgatcatgcagaaagccctggcgcaagccaaagccggccgtctgcatatcctgggcgag
atgaacaaggcgctgtccggcgtgggcgaattctcggtgcacgcaccgcggatcgaaacc
atgcagatcccgaccgacaagatccgtgaagtcatcgggtccggcggcaaggtcatccgc
gaaatcgtcgagctgtcgggtgccaaggtcgacatcaacgacgatggcgtgatcaagatc
gcctccgccaacggtgaagccatccagaaggcctacgacatgatctattcgatcgtggcc
gagccggaagaaggcaagatctacaaaggcaaggtcgtgaagatcgtcgacttcggcgtt
ttcgtgaacttcttcggcaagcgtgacggcctcgtgcacgtctcgcaaatcgagaaccgt
cgcctgaaccacccgtccgatgtcctcaaagaaggtcaggacgtctgggtcaagctggtt
ggctttgacgatcgcggcaaggtgcgcctgtcgatgaaaatggtcgatcagaccaccggc
gaagaatctgcggaagaagttaccgagtaa
DBGET
integrated database retrieval system
