Pseudooceanicola spongiae: F3W81_16235
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Entry
F3W81_16235 CDS
T06866
Symbol
truB
Name
(GenBank) tRNA pseudouridine(55) synthase TruB
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
pshq
Pseudooceanicola spongiae
Brite
KEGG Orthology (KO) [BR:
pshq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pshq03016
]
F3W81_16235 (truB)
Enzymes [BR:
pshq01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
F3W81_16235 (truB)
Transfer RNA biogenesis [BR:
pshq03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
F3W81_16235 (truB)
Prokaryotic type
F3W81_16235 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
Motif
Other DBs
NCBI-ProteinID:
QOL82244
UniProt:
A0A7L9WQX5
LinkDB
All DBs
Position
complement(3457561..3458475)
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AA seq
304 aa
AA seq
DB search
MARKRKGRDISGWLVIDKPAGITSNAVVNKVRWAFDANKAGHAGTLDPEATGVLAVALGE
ATKTVPYITDALKAYVFTVRLGQATNTDDTEGEITATSDLRPTDAEIEAALAPFIGDIMQ
VPPQFSAVKIDGQRAYKLAREGEEMEIAARPLFVDSLVFLERPDADHVTLEMVCGKGGYV
RAIARDLGEALGCYGHVRELRRTWSGPFDVDDSVTFAHIEANARTPELDAHLLPLQLGLT
DLPEVRATAEGAARLRHGNPGMVLTSSVEFGDECWASFEGTPVAVGTYRAGELHPTRVFN
LTQG
NT seq
915 nt
NT seq
+upstream
nt +downstream
nt
atggcacgcaaacgcaaaggtcgcgatatctccggctggctggtgatcgacaaacccgcc
gggatcacttccaacgccgtcgtcaacaaggtccgctgggcctttgacgccaacaaggcc
gggcacgccggcaccctcgaccccgaagcaaccggcgttctcgccgtggctctgggcgag
gcgacaaagaccgtgccctatatcaccgacgcgctgaaggcctatgtctttaccgtgcgc
ctcggccaggccaccaacaccgacgacaccgaaggcgagatcaccgccaccagcgacctg
cgcccgacggacgctgaaatcgaggccgcgctggcgcccttcatcggcgacatcatgcag
gtgccgccgcagttctcggccgtcaagatcgacggccagcgcgcctataagctggcccgc
gagggcgaggagatggagattgcggcccgtcccctgttcgtcgacagcctcgttttcctt
gagcgccccgacgcagatcacgtcacgcttgagatggtctgcggcaagggcggttacgtg
cgcgccatcgcccgtgacctcggcgaagcgctcggctgttatggccatgtgcgcgaattg
cgccgcacctggtccgggcccttcgatgtcgacgacagtgtgacctttgcccatatcgag
gccaatgcccgcacgcccgaactggacgcgcatctgctgccgctgcagctgggcctgacc
gatctgcccgaggttcgcgccacagccgagggcgcggcccgtctgcgccacggcaatccc
ggcatggtgctgacctcctccgtcgagttcggcgatgaatgctgggcgagcttcgagggc
acccccgtcgccgtcggcacctatcgcgccggagagctgcacccgacccgcgtcttcaat
ctgacgcagggatga
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