Pseudooceanicola spongiae: F3W81_19585
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Entry
F3W81_19585 CDS
T06866
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pshq
Pseudooceanicola spongiae
Pathway
pshq03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pshq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
F3W81_19585 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pshq03021
]
F3W81_19585 (rpoB)
03400 DNA repair and recombination proteins [BR:
pshq03400
]
F3W81_19585 (rpoB)
Enzymes [BR:
pshq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
F3W81_19585 (rpoB)
Transcription machinery [BR:
pshq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
F3W81_19585 (rpoB)
DNA repair and recombination proteins [BR:
pshq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
F3W81_19585 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
QOL82833
UniProt:
A0A7L9WSA9
LinkDB
All DBs
Position
4155904..4160040
Genome browser
AA seq
1378 aa
AA seq
DB search
MAQTFLGQKRLRKYYGKIREVLEMPNLIEVQKSSYELFLKSGDQIDPTDGEGIKGVFQSV
FPIKDFNETAVLEFVKYDLERPKYDVEECMQRDMTYSAPLKVTLRLIVFDIDEDTGNKSV
KDIKEQDVFMGDMPLMTPNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAC
RIIPYRGSWLDFEFDAKDIVFARIDRRRKLPVTTLLYALGMDQESIMDAYYKTVNFTYRR
GQGWVTKFFPERVRGTRPTYDLVDADTGEIVAEAGKKITPRAVKKIVDEGTVENLLVPFE
HIVGKFVSKDIINEETGAIYVEAGDELTLDYDKAGDITGGTLQDLLEAGITEIPVLDIDN
INVGPYMRNTMAQDKNMNRNTALMDIYRVMRPGEPPTVEAASNLFDTLFFDSERYDLSAV
GRVKMNMRLDLEKPDTQRTLDRDDIVQCIKALVELRDGKGDIDDIDHLGNRRVRSVGELM
ENQYRVGLLRMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNP
LSEVTHKRRLSALGPGGLTRERAGFEVRDVHATHYGRMCPIETPEGPNIGLINSLATFAR
VNKYGFIETPYRTVKDGQVTDEVNYMSATEEQRHVVAQANATLDENGRLVDEMVNTRQAG
EYTLTPIENVDLIDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLRAEAPLV
GTGIEEVVARDSGAAIMAKRAGIIDQVDAQRIVIRATHDLELGDAGVDIYRMRKFQRSNQ
NTCINQRPQVKVGDTVVKGEVIADGPSTDMGELALGKNIIVAFMPWNGYNYEDSILISER
ISRDDVYTSIHIEEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGADVEPGD
ILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVKPGDYGTVVEVRVFNRHGVEK
DERALQIEREEVERLSRDRDDELAILDRNIYARLKDMILGKVAVKGPRGIKVGSEITEEL
LGTMSRGQWWQLAIEDDHEAKIVEALNEQYEVQKRALDARFEDKVEKVRRGDDLPPGVMK
MVKVFIAVKRKLQPGDKMAGRHGNKGVVSRVVPMEDMPFLADGTPVDFCLNPLGVPSRMN
VGQILETHMGWAARGLGIKIDDALGDYRRSGDMTPVREALRIAYGDDVYEEGFAHMEEAQ
ILEAAGNVTRGVPIATPVFDGAKEADVNDALTRAGFDTSGQSILFDGRTGEQFARPVTVG
MKYLLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQ
EMLTVKSDDVAGRTKVYESIVKGEDNYEAGVPESFNVLVKEVRGLGLNMELLDAEDEE
NT seq
4137 nt
NT seq
+upstream
nt +downstream
nt
atggctcagaccttccttggtcagaaacgacttcgcaaatactacggtaagattcgcgaa
gttctcgaaatgccgaacctcatcgaggttcagaaaagctcttacgaactctttctgaaa
tccggagaccagatcgaccccaccgacggtgagggcatcaaaggtgtcttccagtcggta
ttcccgatcaaggatttcaacgagaccgcagttctcgaattcgtcaaatacgatctggag
cgtccgaagtacgacgtcgaagaatgtatgcagcgcgatatgacctacagcgcaccgctg
aaggtgaccctgcgtctgatcgtgttcgatattgatgaagataccggaaacaaatccgtc
aaggacatcaaggaacaggacgtcttcatgggtgacatgcccctgatgaccccgaacggg
acgttcatcgtgaacggcaccgaacgcgtgatcgtgtcccagatgcaccgttcgccgggc
gtgttctttgaccacgacaagggcaagacccactcctcgggcaaactgctgttcgcctgc
cgcatcattccctaccgcggctcctggctggacttcgagttcgacgccaaggacatcgtc
ttcgcccgcatcgaccgccgccgcaaactgccggtgacgacgctgctctatgcccttggc
atggatcaggaaagcatcatggatgcctactacaagacggtgaacttcacctaccgtcgc
ggccagggctgggtcaccaagttcttcccggagcgcgtgcgtggcacccgtccgacctat
gatctggtggacgccgacaccggagagatcgttgccgaagccggcaagaagatcaccccg
cgcgccgtcaagaagatcgtcgacgaaggcactgtcgagaacctgctggttccgtttgaa
cacatcgttggcaagttcgtctccaaggacatcatcaacgaagaaaccggcgcgatctat
gtcgaagccggtgacgagctgacgctggactacgacaaggccggtgacatcacgggcggc
accctgcaggatctgctggaagccggcatcaccgagattccggtgctggacatcgacaat
atcaacgtcggtccctacatgcgcaacaccatggcgcaagacaagaacatgaaccgcaac
acggcgctcatggacatctaccgcgtcatgcgtccgggcgagccgccgaccgtcgaagcc
gcgtcgaacctgttcgacacgctgttcttcgatagcgaacgctatgacctctcggccgtt
ggccgcgttaagatgaacatgcgcctggacctcgagaagcccgacacccagcggacgctg
gatcgcgacgacatcgttcagtgcatcaaggcactggtcgaactgcgcgacggcaagggc
gacatcgacgacatcgaccacctcggcaaccgtcgtgtgcgttcggttggcgaactgatg
gaaaaccagtaccgcgtcgggctgctccgcatggagcgcgcgatcaaggaacgtatgtcc
tcggtcgagatcgacacggtgatgccgcaggatctgatcaacgccaaaccggcagcagcg
gctgtgcgtgaattcttcggctcctcgcagctgtcgcagttcatggaccagaccaacccg
ctgtccgaggtgacgcacaagcgtcgtctgtcggcgcttgggccgggcggtctgacccgc
gaacgcgcaggctttgaggtgcgtgacgttcacgcaacccactacggccggatgtgcccg
attgaaacgccggaaggcccgaacatcggtctgatcaactctctcgcgaccttcgcgcgc
gtcaacaagtatggcttcatcgaaaccccgtaccgcaccgtcaaggacggccaggtcacg
gacgaagtgaactacatgtcggcgaccgaagaacagcggcacgtggtggcgcaggccaac
gcgacgctggacgaaaacggccgtctggtcgacgaaatggtgaacacccgtcaggcgggt
gaatacactctgacgccgatcgaaaacgtggacctgatcgacgtgtcgccgaaacagctg
gtttcggtcgccgcttcgctgatcccgttccttgaaaacgacgatgctaaccgcgctctc
atgggctcgaacatgcaacgtcaggccgttccgctgctgcgggccgaggcgccgctggtc
ggcaccgggatcgaagaagttgtcgcacgtgactccggcgcggccatcatggccaagcgg
gcagggatcatcgaccaggttgatgcgcagcgtatcgttattcgcgccacgcatgatctt
gagctcggcgatgctggcgtcgacatctaccgcatgcgcaagttccagcgctcgaaccag
aacacctgcatcaaccagcgccctcaggtgaaggtcggtgatacggttgtgaagggcgaa
gtgattgcagatggtccgtccaccgatatgggtgaactggcgctcggcaagaacatcatc
gtcgcgttcatgccctggaatggctacaactacgaagactcgatcctgatctccgagcgg
atttcgcgcgatgacgtctatacctcgatccacatcgaggaatttgaagtcgccgcacgg
gacaccaagctcgggccggaagagatcacccgcgacattcccaacgtcggtgaagaagcg
ctgcgcaacctcgatgaggctggcatcgtctacatcggtgcggatgtcgaaccgggcgat
attctggtcggcaagatcactccgaagggcgaaagcccgatgacgccggaagaaaagctc
ctccgcgccatcttcggtgaaaaggcatcggacgtccgtgacacctcgcttcgtgtgaag
ccgggcgattacggtaccgttgtcgaggtccgcgtcttcaaccgtcacggcgtcgaaaaa
gacgaacgtgcgctgcagatcgagcgtgaagaagtcgaacgtctgtcgcgtgaccgcgac
gatgagctcgccattctggatcgcaacatctacgcccgtctgaaagacatgatcctgggc
aaggtggctgtcaaaggcccccgtggcatcaaggtcgggtcggaaatcaccgaagaactg
ctcggcaccatgtcgcgcggtcagtggtggcagctggcgatcgaagacgatcacgaagcc
aagatcgtcgaagccctgaacgagcagtacgaggtgcagaaacgcgccctggatgcccgc
tttgaggacaaggtcgagaaagtccgtcgtggcgacgatctgccgccgggtgtgatgaag
atggtcaaggtcttcatcgccgtgaagcgcaagcttcagccgggtgacaagatggccggt
cgtcacggtaacaaaggtgtggtgtcgcgcgtcgtcccgatggaagacatgccgttcctc
gccgatggtacccccgtcgacttctgcctcaacccgctgggcgtgccgtcgcgcatgaac
gtcggtcagatccttgaaacccacatgggttgggccgcacgtggccttggcatcaagatc
gacgacgccttgggtgattatcgccgctccggcgacatgacccccgtgcgcgaagcgctg
cgcatcgcttatggcgatgacgtctacgaggaaggcttcgcccatatggaagaagcccag
atcctcgaggccgcaggcaacgtcacacgcggtgtgccgatcgcaacgccggtcttcgat
ggtgccaaagaggcagacgtgaacgatgcgctgacgcgcgccggtttcgacacctcgggt
cagtcgatcctgtttgacggccgcacgggcgagcagtttgcacgtcccgtcaccgtcggc
atgaagtacctgctgaaactgcaccacctggttgacgacaagatccacgcgcgttcgacc
ggcccgtactccctcgtcacgcagcagccgctgggtggtaaggcacagttcggtggtcag
cgcttcggtgagatggaagtctgggctctggaagcttacggcgccgcctacacgctgcag
gaaatgctgaccgtgaagtcggatgacgtggcaggccggaccaaggtctatgaaagcatc
gtcaagggcgaggacaactatgaggccggtgtgcctgaatccttcaacgttctcgtgaag
gaagtccgcggcctcggcctgaacatggaactcctggacgcggaggacgaggaataa
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