Pseudooceanicola spongiae: F3W81_19725
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Entry
F3W81_19725 CDS
T06866
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pshq
Pseudooceanicola spongiae
Pathway
pshq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pshq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F3W81_19725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pshq03019
]
F3W81_19725
Enzymes [BR:
pshq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
F3W81_19725
Messenger RNA biogenesis [BR:
pshq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
F3W81_19725
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
CMS1
Motif
Other DBs
NCBI-ProteinID:
QOL83310
UniProt:
A0A7L9WW71
LinkDB
All DBs
Position
complement(4181313..4182629)
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AA seq
438 aa
AA seq
DB search
MDFDMLGLPSRLCANMKTLGITEPTPIQTQAIPHAMNGRDVMGLAQTGTGKTAAFGLPLL
SALLRMEGRPLPKGVRGLILAPTRELAKQILDNLHAYADGTAVRIALVVGGASINAQISK
LQKGTDLLVATPGRLIDLLDRKAVRLDETKFLVLDEADQMLDLGFIHALRRIAPLLPKER
QTMLFSATMPKHMSEISSAYLTNPVRVETAPPGKPAEKIDQYIHFVQQGDKTQLLIQHLD
KHREQSALVFSRTKHGAERLMGQLERAGYSAGSVHGNKSQGQRDRALKSFRNGDLKVLVA
TDVAARGIDIPEVRYVYNYDLPNVPDNYVHRIGRTARAGRDGTAIAYCAPAEMGELRDIQ
KVMGRDIPVAGGEAWEVRGGTSKNGGGRGKGGGGGARSRGGPGGGGGGAGRGKPGGGFGK
SEGHSAKGGARRRSTRAA
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
ttggatttcgacatgctgggactgccgtcccgcctttgcgccaacatgaaaacgcttggc
attactgaacccacccctatccagacccaagccatcccgcacgccatgaatggccgtgac
gtgatgggtctggcccagaccggcaccggcaagaccgctgccttcggcctgccgctgctc
agcgctctgctgcgtatggagggccgtccgctgccgaaaggcgtgcgcgggctgatcctc
gccccgacacgcgagctggccaaacagatcctcgacaacctgcacgcctatgcagacggc
actgccgttcgcattgcgctggttgtgggcggcgcctcgatcaacgcccagatctccaag
ctgcaaaagggcaccgacctgctggtcgcgacccccggccgcctgattgacctgctggac
cgcaaggccgtccgtctggacgaaaccaagttcctggtgctggacgaagctgaccagatg
ctggacctcggctttattcacgcgctgcgtcgcattgcgccgctgctgccgaaggaacgt
cagaccatgctgttctcggccaccatgccgaagcacatgagcgagatttcctcggcgtac
ctgaccaaccctgtgcgggttgaaacggcgcctccgggcaagccggccgagaaaatcgac
cagtacattcactttgtgcaacaaggtgacaagacccagctgctgatccagcacctcgac
aagcaccgcgagcagtcggctctggtgttctcgcgtaccaagcacggcgccgagcgcctg
atgggtcagcttgagcgcgccggctactccgcaggctccgtccatggcaacaagagccaa
ggccaacgtgatcgcgcgctgaagtcgttccgcaatggcgatctgaaggttctggttgcg
accgacgtggccgcgcgtgggatcgacatccccgaagtgcgttacgtctacaactacgac
ctgccgaacgtgccggacaactatgtccaccgcatcggccggaccgcacgcgcgggccgt
gatggcaccgcgattgcctattgcgcccccgccgagatgggcgaactgcgcgacatccag
aaagtcatgggccgggatattcccgtggccggtggcgaagcctgggaagtccgtggcggc
acctcgaaaaacggtggcggtcgtggcaaaggcggcggcggcggtgcccgtagccgtggt
ggccccggtggcggtggtggcggcgcaggccgtggcaagcccggtggcggcttcggcaag
tccgaaggccactcggccaagggtggcgcacgtcgtcgcagcacacgcgcagcctaa
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