Pseudomonas sp. HS6: JJN09_00130
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Entry
JJN09_00130 CDS
T09971
Name
(GenBank) DEAD/DEAH box helicase
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
pshs
Pseudomonas sp. HS6
Brite
KEGG Orthology (KO) [BR:
pshs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pshs03009
]
JJN09_00130
Enzymes [BR:
pshs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JJN09_00130
Ribosome biogenesis [BR:
pshs03009
]
Prokaryotic type
rRNA helicases
JJN09_00130
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
AAA_19
Motif
Other DBs
NCBI-ProteinID:
UQS15295
LinkDB
All DBs
Position
complement(25819..27159)
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AA seq
446 aa
AA seq
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MFSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILN
RLIGPAKIRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFKVQAAMLRK
VPDILIGTPGRMIEQLNAGNLDLKEVEVLVLDEADRMLDMGFAEDVQRLVDECPNRQQTM
LFSATTGGSGLREMIGKVLNNPEHLQLNAVSQLNSTTRQQIITADHNQHKEQIVNWLLAN
ETYQKAIVFTNTRAMADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKQGGVKILVAT
DVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSIER
YLKQSFERRTIKEVKGTYGGPKKVKASGKAVGVKKKKTDAKGDKKKTAAKTPTKRKSANR
PKPDSLVSSDGMAPLKRRKPAEPAAE
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
gtgttttcccaattcgccctgcacgaacgcctgctcaaagccgtggccgagctgaaattt
gtcgagccaacgcctgtgcaagccgcggccattccgctggcgcttcaggggcgtgacctg
cgggtgacggcgcaaaccggtagcggcaagaccgccgcttttgtcctgccgatcctcaac
cgcctgatcggcccggccaagatccgcgtcagcatcaagaccctgatcctgctgccgacc
cgcgagctggcccagcagaccctgaaggaagtcgagcgcttttcgcagttcactttcatc
aagtccggcctgatcaccggcggtgaagacttcaaggtccaggccgccatgctgcgcaag
gtgccggatattctgatcggcaccccggggcggatgatcgagcaattgaacgccggcaac
ctcgatttgaaagaagtcgaagtgctggtgctcgacgaagccgaccgtatgctcgacatg
ggtttcgccgaagacgtgcagcgtctggtcgacgaatgcccgaaccgtcagcagaccatg
ttgttctcggcgactaccggcggttccggcctgcgcgagatgatcggcaaagtgctgaac
aatcctgagcacttgcagctcaacgcggtcagccaactgaactcgaccacccgtcagcag
atcatcaccgccgaccacaaccagcacaaagaacagatcgtgaactggctgctggccaac
gagacctaccagaaggccatcgtcttcaccaacacccgggccatggccgaccgcatctac
ggtcgtctcgtcgctcaggaatacaaggcgttcgtgctgcacggcgagaaagaccagaag
gatcgcaaactggcgatcgaccgtctgaagcagggcggcgtgaagatcctggtggccacc
gacgtggcggcccgtggtctggacgttgatggtctggatctggtgatcaacttcgacatg
ccacgcagcggcgacgaatacgtgcaccgtattggtcgtaccggccgtgccggcaacgac
ggtctggcgatctcgctgatctgccacggcgactggaacctgatgtcgagcatcgagcgt
tatctgaagcagagcttcgagcgccgcaccatcaaggaagtcaaaggcacctacggcgga
ccgaaaaaggtcaaggcctcgggcaaagccgtcggcgtgaagaagaaaaagaccgacgcc
aagggcgacaagaagaaaaccgccgccaagacgccaaccaagcgcaagagcgccaaccgt
ccgaagccggattctctggtgagcagcgacggcatggccccgctcaagcgccgcaagccg
gcagagccagcggctgagtaa
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