Pseudomonas sp. HS6: JJN09_03880
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Entry
JJN09_03880 CDS
T09971
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
pshs
Pseudomonas sp. HS6
Pathway
pshs03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pshs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
JJN09_03880 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pshs03400
]
JJN09_03880 (recD)
Enzymes [BR:
pshs01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
JJN09_03880 (recD)
DNA repair and recombination proteins [BR:
pshs03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
JJN09_03880 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
AAA_11
NAT10_TcmA_helicase
SH3_13
AAA_22
Viral_helicase1
UvrD-helicase
AAA_17
SLFN-g3_helicase
AAA_16
PhoH
T2SSE
AAA_28
AAA_5
NTPase_1
TraI_hel_assoc_N
AAA_25
NACHT
Mg_chelatase
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
UQS16015
LinkDB
All DBs
Position
complement(815830..817932)
Genome browser
AA seq
700 aa
AA seq
DB search
MSRTFADFSPVSLDADGLAQLTPLTRAYDLLQLLNLWVERGWLRALDKAFVAFLYELAPD
VDPLVLLAAALTSHQLGHGHVCLDLFETLKAPDFALSLPPEGDVQSGVLLLPSQLLESLE
GAHWCKVLAGSSLVALAADDNESARQCPLVLSGKRLYLRRYWAYERRIDTALRQRLAEHE
PTPGDLSQRLDELFGSAKQTGAIDWQKLACALATRGAFSIVTGGPGTGKTTTVVRLLALL
QAPAVEAGQPLRIRLAAPTGKAAARLTESISQQVQSLKVADAVREKIPSEVTTVHRLLGS
RPGTRHFRHHAGNRLPLDVLVVDEASMIDLEMMANLLDALPSHARLVLLGDKDQLASVEA
GAVLGDLCRDAEAGWYSPQTRQWLESVSGESLQDSGLHEDSDGTHPLAQQVVMLRHSRRF
GEGSGIGQLARRVNQQLPDEARQLLTARSHDDVYSLALNGEQDHALERLVLEGHGDGPHG
YRHYLSVLRNQRPAGGAPLEHPGWLDWAREVLQAFDTFQLLCAVRKGPWGVEGLNQRITD
ALLKARMIDSDQQWYEGRPVLMTRNDYGLGLMNGDIGIALKLPERDGPNAGEPVLRVAFP
RNDGRGGVRFVLPSRLNDVETVYAMTVHKSQGSEFAHTALILPDALNPVLTKELIYTGIT
RAKHWFTLIEPRAGVFEEAVQRKVKRLSGLMLELEEGGRG
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcaccttcgcggatttttcgccggtttcgctggatgccgacggcctcgcgcag
ctcacacccctgacgcgagcctatgacctgttgcagttacttaacctatgggttgagcgt
ggatggctgcgggctctggacaaggcattcgtggcatttctttacgaattggcacctgac
gtcgatccgctggtattgcttgctgccgcattgaccagtcatcaactcggccacggccat
gtgtgcctggatttgttcgaaaccctcaaggccccggacttcgccctgtccctgccaccg
gagggagatgtgcaatcgggtgtgttgttactgccatcgcaattgctggaatcgcttgag
ggggcgcactggtgcaaggtgttggccggcagctcgctggtggcgctggctgccgacgac
aatgagtctgcacggcaatgccctctggtgctgtccggtaaacgcctgtacttgcggcgg
tactgggcctatgagcgacgcatcgacactgctctgcgtcagcgcttggcggagcatgaa
ccgacgccgggcgacctgtcgcaacgtctggacgagttgttcggatcggcaaagcaaacc
ggtgcgatcgactggcagaaactcgcttgcgcgttggcgacccgaggtgccttcagcatc
gtcacgggcgggccaggcaccggcaagaccaccacggtggtacgtctgctggcgttgctt
caggccccggcggtcgaggccggtcagcctctgcgcattcgcctggcggcccccacgggt
aaagcggctgcgcggttgaccgagtccatcagccagcaagtgcaatcgctgaaagtcgcc
gatgccgttcgggaaaaaatcccttccgaggtcaccacagttcaccgcttgctcggcagc
cgtcccggtacacgacacttccgtcaccatgccggtaaccgtttgccgctggatgtgttg
gtggtcgatgaagcatccatgatcgacctggaaatgatggccaacctgcttgatgcgttg
ccgtcacacgctcgtctggtgttgctgggagacaaggatcagttggcctccgtcgaggcc
ggtgcggtgctgggggatctgtgccgcgacgccgaggcgggttggtacagcccgcagacc
cgccagtggctggagtccgtgagcggcgagtccttgcaagacagcggtttgcacgaggac
agcgacggtacgcacccgttggcgcagcaagtggtgatgctgcgtcactcacggcgtttc
ggcgagggcagtggtatcggccagcttgcgcgacgggtgaatcagcaattgccggatgag
gctcgccagctgttgactgcgcgaagccatgacgacgtgtattcactggcgctcaacgga
gagcaggaccacgcactggagcgactcgttctggaagggcacggcgatggtccccacggg
tatcggcattacttgagcgttctgcgcaatcagcgtccagccggcggagctccccttgag
catccaggttggctcgattgggcgcgtgaggtcttgcaggcgttcgataccttccagctc
ctgtgcgcggtacgtaaagggccgtggggtgtcgaggggctgaaccaacgcatcaccgac
gcgctgctcaaggcgcggatgatcgacagcgaccagcaatggtatgaaggtcgcccggtc
ctgatgactcgcaatgactacggcctggggctgatgaacggtgatatcggcatcgccctc
aaattgcccgagcgagatgggccgaacgccggtgaaccggtccttcgggtggcgttcccg
cgtaacgacggacgcggcggggtgcggttcgtgttgccgagccggctcaatgatgttgaa
accgtctacgcgatgaccgtgcacaagtcgcaaggctcggagtttgcccataccgcgctg
atcctcccggacgccttgaatccggtgttgaccaaagagctgatctacaccggcattacc
cgagccaagcattggttcaccttgatcgaaccgcgagccggggtgtttgaggaagcggtg
cagcgcaaggtcaagcgcttgagcggtctgatgttggaactggaggagggggggcgtgga
taa
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