Pseudomonas sp. HS6: JJN09_09225
Help
Entry
JJN09_09225 CDS
T09971
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
pshs
Pseudomonas sp. HS6
Brite
KEGG Orthology (KO) [BR:
pshs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pshs03000
]
JJN09_09225
Transcription factors [BR:
pshs03000
]
Prokaryotic type
Helix-turn-helix
Other families
JJN09_09225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
GAF
AAA_lid_14
HTH_8
HTH_30
AAA_5
nSTAND6
HTH_7
AAA_2
HTH_23
AAA_3
HTH_10
AAA
AAA_7
Mg_chelatase
AAA_16
HTH_22
HTH_Tnp_1
HTH_28
nSTAND3
HTH_20
DUF815
HTH_11
HTH_AsnC-type
HTH_psq
HTH_17
Motif
Other DBs
NCBI-ProteinID:
UQS17019
LinkDB
All DBs
Position
2001357..2003204
Genome browser
AA seq
615 aa
AA seq
DB search
MAAPVPPLSHEAIVQDSWSRCRAFGLKHQSVPAFDQLPSAGIAQLLDSHHSLVQTTHQEV
LPYYENILSNSNCLIMLADNQGQVLTSWGTQRFIEPNLARGFQAGASWMERSSGTNAIGT
ALACEQAVHIEHDEHFLKANRFMTGSAAPIFNAERKVIAVLDVSSDSYLPPSHTLGMVKM
MSQTVENRLILNLFHGQHFQLTFNTGLNNLDSQWAGLLIFDESGQVLSANRRADNLLGVR
LSRVSVESLFKVSLLELLNQPDGLPFSLQTSGRNRFQCLLKRPKQAPIQARVFAEAKATE
TTVAAPTAISLSTLHFGDSRVEKAVRQAERLLEKDIPLLIHGETGVGKEVFVKALHRASS
RSKQAFIAVNCAAIPAELVESELFGYEKGAFTGANQKGSIGLIRKADKGTLFLDEIGDMP
LPTQARLLRVLQERCVQPVGSSELFPVDLRIISATNRSLREQVQLGRFREDLYYRIGGLT
LELPPLRERTDKQALFKRLWEQHREPTQWAGLSREVLELFDRHPWPGNLRQVSSVMQVAL
AMAEEQPVRPEHLPDDFFVDLEMEPLDTPEPLGIDLNDSEALNRELQAAGGNISHLARRL
GVSRNTLYKRLRQAE
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atggccgcacctgtcccgccgctttcccacgaggccattgttcaggactcctggtcccgt
tgccgcgccttcggtctcaagcatcaaagtgtcccggcgttcgatcagttgccctccgcc
ggcatcgcccaactgctcgacagtcaccattcgctggtgcagaccacccaccaggaagtg
ctgccgtactacgagaacatcctgagcaattccaactgcctgatcatgctggcggacaat
cagggccaggtcctgacgtcctggggcacccagcgctttatcgagccgaatctggcgcgc
ggctttcaggccggcgcaagctggatggagcgctcaagcggcaccaatgcaatcggcacg
gcgctggcctgcgagcaggcggtgcacatcgagcacgacgagcacttcctcaaggccaac
cgcttcatgaccggttccgccgcgccgattttcaacgccgaacgcaaggtcatcgcggtg
ctagatgtgtccagcgacagctacctgccgccctcgcacaccctcggcatggtcaagatg
atgagccagaccgtggagaaccggctgatcctcaacctgttccatggccagcactttcaa
ctgaccttcaacaccgggttgaacaacctcgacagccaatgggcagggttgctgattttc
gatgaaagcggtcaggtgttgtcggccaaccgccgggccgacaatctgctgggcgtacgc
ctgtcgcgggtgagcgtcgagagtctgttcaaagtttcattgctggaactgctcaatcag
cctgacggcttgccgttttccttgcagacgtcggggcgcaaccgattccagtgtctgttg
aaacggcctaaacaggcgcccattcaggcgcgggtgttcgctgaagccaaagccaccgaa
acgacggtcgccgcccccacggccatcagcctgagcaccctgcacttcggcgacagccgc
gtggaaaaagctgtacgtcaggccgagcggctgctggaaaaagacattcctctgttgatt
cacggtgaaaccggggtcggaaaggaagtgttcgtcaaagccctgcatcgggccagctct
cgcagcaaacaggcgttcatcgccgtgaactgcgccgcgatccccgccgaactggtggaa
tccgagctgttcggctacgaaaaaggcgcgttcaccggcgccaaccagaaaggcagcatc
ggcctgatccgcaaggccgacaaaggcacgttgttcctcgacgaaatcggcgacatgccg
ctaccgactcaggcccgtctgttgcgggtgttgcaggagcgttgcgtgcaaccggtgggc
agcagtgaattgttcccggtggatctgcgaatcatctccgccaccaaccgttcattgcgc
gagcaagtgcagctgggacggtttcgcgaagatttgtactaccgcatcggcggcttgacc
ctggaattgccgccgctgcgcgagcgcactgacaaacaagcgttgttcaagcgcttgtgg
gaacaacatcgcgaaccgacgcaatgggcgggattgagccgcgaggtgctggagttgttc
gaccggcacccgtggccggggaatttgcgtcaggtcagcagcgtgatgcaggtcgcgttg
gccatggccgaagagcaaccggtaaggcctgagcatttaccggatgatttttttgtcgac
ctggagatggagccactggatacgccagaacccttggggatcgacctgaatgacagcgag
gcgttgaatcgggagttgcaggcggccggcggcaatatctcccatctggcgcggcggttg
ggcgtcagtcgcaatacgctctacaagcgcttgcgccaggctgagtga
DBGET
integrated database retrieval system
