Pseudomonas sp. HS6: JJN09_10750
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Entry
JJN09_10750 CDS
T09971
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pshs
Pseudomonas sp. HS6
Pathway
pshs03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pshs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JJN09_10750 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pshs03400
]
JJN09_10750 (mfd)
Enzymes [BR:
pshs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JJN09_10750 (mfd)
DNA repair and recombination proteins [BR:
pshs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
JJN09_10750 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
AroM
AAA_22
Fe-ADH
Motif
Other DBs
NCBI-ProteinID:
UQS17306
LinkDB
All DBs
Position
2330638..2334087
Genome browser
AA seq
1149 aa
AA seq
DB search
MPVLRLPLLPAAAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSF
FAPDLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELEHGVLVVPITTALHRLAPT
KFLLGSSLVLDVGQKLDVEQMRSRLEASGYRYVDTVYEHGEFTVRGALIDLFPMGSKLPY
RIDLFDDEIETLRTFDPENQRSIDKVDSVKLLPAKEFPLQKDAVTRFKARFRERFDVDFR
RCPIFQDLSSGITPAGIEYYLPLFFEETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRN
RYEERRVDPSRPLLPPAELFLPVEDCFARLKNWPRVVASQQDVETGAGRERFPAQALPNL
AIEAKATQPLAALSAFLDEFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWPDFVAS
KDRLAITIAPLDEGLMLDDPALALVAESPLFGQRVMQRRRREKRADANNDAVIKNLTELR
EGAPVVHIDHGVGRYLGLTILEIDNQAAEFLTLEYAENAKLYVPVANLHLIARYTGSDDA
LAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSAGFP
FEETPDQQSTIEAVREDMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQVAILVPT
TLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVNAAVAQLAEGNIDIVIGTHKLLQDDV
KIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIAT
PPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAAELAELVPEARI
GIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPRQQITGDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGDGQSGQIQAVGFTLYMEMLERAVKSIRKGEQPNLDQPLGGGPEVNLRVPALIPEDYLP
DVHARLILYKRIASATDEEGLKDLQVEMIDRFGLLPEPTKNLVRITALKLQAEQLGIKKV
DGGPQGGRIEFAAQTPVDPMTLIKLIQSQPKRYKFEGATMFKFQVPMERPEERFNTVEAL
FERLIPKTA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgcctgttctgcgtctaccgcttctccctgctgcggcaggaaaacagcattggggcaat
ctgcccggtgctgccctgagcctggcgattgccgaggctgccagcgctgccaagcgcttc
acgttgctactgaccgccgacagccagagtgccgaacggctggagcaggagctgagcttc
ttcgccccggatttgccggtgctgcatttcccggactgggaaaccctgccctacgacctg
ttctcgccgcaccaggacatcatctcccagcgcatcgccagcctttatagactgccggag
ctggaacatggcgtgctggtggtgccgatcaccacggccctgcatcgtctggcgccgacc
aaattcctgctcggcagcagcctggtgctggatgtcggccagaagctcgacgtcgagcaa
atgcgctcgcggcttgaagccagcggctatcgatacgtcgacacggtttacgaacacggc
gagttcaccgtacgcggtgcactgatcgacctgttcccgatgggcagcaaactgccgtat
cgcatcgacctgttcgacgacgaaatcgaaaccctgcgcaccttcgacccggaaaaccag
cgctccatcgacaaggtcgattcggtcaagctgctgccggccaaggagttcccgctacag
aaagacgcggtgacccgcttcaaggcgcgttttcgcgagcgtttcgacgtcgacttccgc
cgctgcccgatcttccaggatctgagcagcggcattacgccggccggtatcgagtactac
ctgccgttgttcttcgaagagacctcaaccctgttcgactacctgccccaggacacccag
gtgttctcgctgccgggcatcgagcaagcggcggaaaacttctggaacgacgtgcgcaac
cggtatgaagagcgccgcgtcgacccatcgcgtcctttattgccgccggccgaactgttc
ctgccggtggaagactgcttcgcccgcctgaagaactggccgcgagtggtcgccagccaa
caggacgtggaaactggtgcaggccgcgaacgcttcccggcgcaggccttgccgaatctg
gcgatcgaagccaaggccacgcaaccgctggccgcgctttccgcgttcctcgacgaattc
ccggggcgcgtgctgttcaccgccgaatccgccggccgtcgcgaagtgctgctggaattg
ctggagcgcctgaagctgcggccgaaaaccgtcgacagctggccggacttcgtcgcgagc
aaagatcgcctggcgatcaccatcgccccgctcgacgaaggcctgatgctggatgacccg
gcgctggcactggtcgcggaaagcccgctgttcggccaacgcgtgatgcagcgtcgccgt
cgcgaaaaacgcgcagacgccaacaacgacgcggtaatcaagaacctcaccgagttgcgc
gaaggcgcgcctgtggtgcacatcgaccacggtgtcggccgctatctgggcctgacgatt
ctggaaatcgacaatcaggccgccgagttcctgactctggaatacgccgagaacgccaaa
ctctacgtgccggtggccaacctgcacctgatcgctcgttacaccggcagcgacgacgca
ctggccccgctgcaccgcctcggctccgagacctggcagaaggccaaacgcaaagccgcg
gagcaagtgcgtgacgttgctgctgaattgctcgacatctatgcccgtcgcgccgcccgc
gaaggttacgcgtttgccgatccgaaggccgattacgcgactttcagcgccggcttcccg
ttcgaagaaaccccggaccagcaatccaccatcgaagccgtgcgcgaagacatgctcgcg
ccgaagccgatggatcggctggtctgcggcgacgtgggtttcggcaagaccgaagtggcc
atgcgcgccgcgttcatcgcggtgcatggtggcaagcaagtggcgattctggtgccgacc
accctgctcgcccagcagcactacaacagcttccgcgaccgcttcgccgactggccggtg
accgtggaagtgatgagccgtttcaaatcggccaaggaagtgaacgcggcggtggcccaa
ctggccgaaggcaacatcgacatcgtcatcggcacacacaagttgctgcaagacgacgtc
aagatcaaaaatctcgggctggtgatcatcgacgaagagcaccgcttcggtgtccgtcag
aaggaacagctcaaggccctgcgcagcgaagtcgatatcctcacgctgactgccacgccg
attccgcgcacgctgaacatggcggtgtcgggcatgcgcgacctgtcgatcatcgccacg
ccgccggcgcgacgcctgtcggtgcgcaccttcgtcatggagcagaacaagagcacagtc
aaagaggccttgctgcgtgagctgctgcgcggcggtcaggtctattacctgcacaacgat
gtgaagaccatcgagaaatgcgccgccgaactggcggaactggtgccggaagcgcggatt
ggcatcggccacgggcagatgcgcgaacgcgaactcgagcaggtgatgagcgacttctac
cacaagcgcttcaacgtgctgatcgcctcgaccatcatcgagaccggcatcgacgtgccg
agcgccaacaccatcatcatcgagcgcgccgacaaattcggcctggcgcagctgcaccag
ttgcgcggccgtgttggtcgcagtcaccaccaggcctacgcctacctgctgactccgcca
cgccaacagatcaccggcgatgcggaaaaacgtctggaggcgattgccaatactcaggat
ctgggcgctggcttcgtattggccaccaacgacctggaaatccgtggcgccggcgaactg
ctgggcgacgggcagagcgggcagattcaggcggttggcttcacgctgtacatggaaatg
ctcgaacgcgcggtgaagtcgatccgcaaaggcgagcagccgaacctcgaccaaccgctc
ggcggcggcccggaagtcaacctgcgagtgccggcgctgattccggaagattatctgccg
gacgtgcatgcacgcttgatcctctacaaacgcatcgcgtcggccaccgacgaggaaggc
ctgaaagatctgcaagtggagatgatcgatcgcttcggcctgctgccggaaccgaccaaa
aatctggtgcgcatcaccgcattgaaattgcaggccgaacagctgggcatcaagaaagtc
gatggcggcccgcaaggcggacgcatcgagttcgcggcgcagacgcctgtcgacccgatg
accctgatcaaactgatccagagtcagccaaaacgctacaaattcgaaggcgccacgatg
ttcaagttccaggtgccaatggagcgcccggaagagcgctttaatactgtggaggcgctg
ttcgagcgcctcatcccgaaaactgcttga
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