Pseudomonas sp. HS6: JJN09_10950
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Entry
JJN09_10950 CDS
T09971
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
pshs
Pseudomonas sp. HS6
Brite
KEGG Orthology (KO) [BR:
pshs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pshs03000
]
JJN09_10950
Transcription factors [BR:
pshs03000
]
Prokaryotic type
Helix-turn-helix
Other families
JJN09_10950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
HTH_8
AAA_lid_14
GAF
AAA_5
Mg_chelatase
AAA_2
HTH_30
DUF134
HTH_1
HTH_23
HTH_7
HTH_28
AAA
HTH_22
Mga
HTH_20
HTH_29
Diguanyl_cycl_sensor
HTH_11
AAA_7
PAS_9
HTH_50
HTH_17
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
UQS17344
LinkDB
All DBs
Position
complement(2381593..2383497)
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AA seq
634 aa
AA seq
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MTLIKTTDPQSHHEARLAREKLHLEGQVPDGVLRAEIDASWRRSLSHGVHFNGKHELALE
SSASLDVLLASNRLLIDAAIPAIDYLAERQGKEGLIILANSDATILAVEGRADRLKGSGL
QDITLGACWSEAARGTNALGTALVEARPTLIDCGEHYLDRLTDFSCTSVPIHCPQGEILG
VLDLTREGPLGRVHDSTALLSMAVSQIESRVFNNSFPDQIVLAFHSRRQYLESPWQGLLA
VSLGGQILAVSAQACQLLRAERSALVGKRCEEFLGVDGVQLLTRLQQGGVGSVQTATGEF
FYKTLRAPARSVNLGGPPRSVAKTAKAQPDLEALAGNNARYARALRMARQGLANELPVLL
LGETGTGKEVIARALHLVGSRSDKPFVAVNCAAIPEGLIESELFGYREGAFTGSRRGGMI
GRLQQAHGGTLFLDEIGDMPLALQARLLRVLQDRKVAPLGAGEEQDIDVALICATHRDLK
RQVEEKQFREDLFYRVNGISVMLPALRERDDFSALVARLLSKLDAPNAVLHDDLNRLLAG
YHWPGNIRQLEMVLRTALAMREPGETVLTLDHLPDSMLDELSATEKPQTGSIRENELEMI
RQSLDTHQGNVSAAADALGISRATLYRKLKQLRS
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgactcttataaaaacaaccgatccccagtctcaccacgaagcccggctggcccgggaa
aaactccatctcgaagggcaggtcccggatggcgtgttgcgtgcggagatcgatgcttcg
tggcggcgcagtctgagccacggcgtgcatttcaatggcaagcatgagctggcgctggaa
tcgagcgcgagtcttgacgtgttgctggcgagcaatcgcctgctgatcgatgcggcgatt
ccggccatcgattacctggccgagcgtcagggcaaggaaggcctgatcatcctcgccaat
tccgacgccaccatccttgcggtggagggacgtgccgaccggctcaagggcagcggtttg
caggacattaccctcggcgcctgctggagcgaagcggcacgcggcaccaacgccctcggc
acggcactggtggaagcacggcccaccctgatcgattgcggcgaacattacctcgaccgc
ctcaccgatttttcctgcacctcagtgccgatccattgccctcagggcgagattctcggc
gtcctcgacctgacccgcgaaggccccctcggccgcgttcatgacagcaccgcgctgctg
agcatggcggtcagtcagatcgagagccgagtgttcaacaacagttttcccgatcagatc
gtcctcgccttccacagtcgccggcagtatctggaatcgccgtggcaaggcttgctcgcg
gtcagtctcggcgggcagattctggcagtcagcgcccaggcctgtcagctgctgcgggcc
gagcgttcggcattggttggcaagcgctgcgaagagtttctcggcgtcgatggcgtgcaa
ttgctgacccgtctgcaacagggcggcgtcggcagtgtgcagaccgccacgggcgaattt
ttctacaaaaccctgcgagccccggcgcgctcggtcaacctcggcgggccgccgcgcagc
gtggcgaaaaccgccaaggcgcaaccggatctggaagcactggccggcaacaatgcccgt
tatgcccgagccttgcgcatggctcggcaaggcttggccaatgaactgccggtattgctg
ctcggcgaaaccggtactggtaaagaagtgatcgcccgcgccctgcacctggtcggcagc
cgtagcgacaaacccttcgtggctgtgaactgcgcggcgattcccgaaggcttgatcgag
tcggaactgttcggctaccgcgaaggcgcgttcaccggatcgcgccgtggcgggatgatc
gggcgcctgcaacaggcccacggcggcaccttgttcctcgatgaaatcggtgacatgccg
ctggctttgcaggcgcgtttgctgcgagttttgcaggatcgcaaggtcgcgccgttgggc
gccggcgaagagcaggacatcgacgtcgcgctgatctgcgccacccatcgcgacctcaag
cgtcaggtcgaagaaaaacagtttcgcgaggacttgttctaccgggtcaacggcatcagc
gtgatgcttccggccttgcgtgagcgcgatgacttcagtgcgctggtcgctcgtctgctg
agcaaactcgacgcgccgaacgccgtgctgcacgacgacctcaatcgcctgctcgcgggt
tatcactggccgggcaacatccgccagttggaaatggtcttgcgcaccgcactggcgatg
cgcgagccgggggaaaccgtactgaccctcgaccacttgcccgacagcatgctcgacgag
ttgtccgccaccgagaaaccccagaccggcagcattcgcgaaaacgaactggaaatgatc
cgccagtccctcgatacccatcagggcaatgtctcggctgcggccgacgccctcggcatc
agccgcgcgaccctgtaccgcaaactcaaacagttgcgctcgtga
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