Pseudomonas sp. HS6: JJN09_12180
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Entry
JJN09_12180 CDS
T09971
Name
(GenBank) hypothetical protein
KO
K20276
large repetitive protein
Organism
pshs
Pseudomonas sp. HS6
Pathway
pshs02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
pshs00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
JJN09_12180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Big_13
Big_6
Big_3_5
Big_9
Cadherin_5
Peptidase_C25_C
CshA_repeat
Phage_TAC_13
Motif
Other DBs
NCBI-ProteinID:
UQS17578
LinkDB
All DBs
Position
2677481..2682520
Genome browser
AA seq
1679 aa
AA seq
DB search
MNTNAVNVAIVDGKTITQTTELPNDGSGKPVRIKAIADGKYILAEGDKGVAPQNITIKRV
GKDLHVALEGTDLNQPQLIIEGFFDAQGQLIGVGEDGAYYEYISSDAEQDHSAPFLIDGM
SSPQVLGSEQMVGFGNGLVTGVGIGWFWPALLGLAGVGLLGAGYAASRDDDSHKDEVAAA
LPVTPNLGSSGDNVGDQTGPLVSGEATDDTTPTFNGVGTPGNTIIVYDGDEIIGEAIVGD
DGAWTFTPDPALGGGAHEIIFVEEDPQGHQSAPSEGFEFIVDITAPGKSMIVDVLDNAGD
QQDPVAQNGFTDDNTPTLRGRAEPGATVEIFANGVKIGEAPVDAAGNWSFSPTQALSDGT
YEFSAVAVDAAGNRGLASDPYVLTIDATAPGKPGEGGNGGIDSVVDDVEPGAGQIANGGY
TNDTTPTLGGGNQQPGDTVIISDNGVIIGSAVVDANGNWTFTPETPLIDGTHNLTIVVTD
SAGNSSEASDPYWVNVKTEAPGKPGEGGNGGIDSVIDDVDSGLGQIANGGLTNDTTPTLS
GGNQRPGDTVTISDNGTVIGSAIVDADGNWSLTPEAPLSDGTHSLTMVVSDPAGNVSEAS
DPYVVIVETVAPGKPGEDGNGGIDSVVDDVDTGIGQIANGGLTNDNTPTLSGGNQQPGDT
VIISDNGTVIGSAVVDADGNWTFTPVTPLSEGSHELTIAVSDPAGNVSEASDPYRVIVES
VAPGKPGEGGNGGIDSVVDDVDSGVGQIANGGLTNDTTPTLSGGNQQPGDTVIISDNGTV
IGSAVVDADGNWSFTPDTALTDGSHNLTMTVSDPAGNVSEASDPYVVIVETVAPGKPGED
GNGGIDSVVDDVNTGIGQIANGGLTNDATPTLSGGNQQPGDTVIISDNGTVIGSAVVDAS
GNWTFTPDTALIDGTHNFTMTVSDPAGNVSEASDPYVVFLETVAPGKPGQDGNGGIDSVV
DDVDSGVGQIANGGLTNDNTPTLSGGNQQPGDTVIISDNGNVIGSAVVDADGNWTFTPDT
ALTDGSHNLTMTVSDPAGNVSEASDPYVVIVETVAPGKPGEGGNGGIDSVVDDVDTGIGQ
IANGGLTNDNTPTLSGSNQQPGDTVIISDNGTVIGSAVVDADGNWTFTPEDALTDGTHNL
TMAVSDPAGNMSEASEPYVVIVETVAPEVQTTVESMGKDGGSSSTDFITNDGTAGRLIEG
SLTAALVAGEKVQVSTDEGATWGDALLNADGTWSYVDLTAHNGDWVIQTRVVDLAGNVNA
ISSQNVDLDTVAPSAPTSLEFNGAVVTVNFDGNGINPGDTVQLVVGEDRFEVQLTQAQID
DGKVDITTNASAAMTNSHAVLIDVAGNVSQQLMPVLETVDFESETTGEGIPAGGVKDFGA
FTFNWGGWTTSNSPLGVIEGGLIDGFNAPSVGLSFVTTNTRANPSISLNGGVEAGSMSFL
VGDASRPITLNFLSASGELVHTVMLPSVPTGVQEVNFQLPDGKTFTTVEFAGTDGDWTWV
DNFKFSNGSFDHVDPPALQQIEGTGAYYGDDADNVFALNNTAHLNDASSIVNGGEGRDTL
SLVGTNQVLNLDNIAGKLESIEIVDITGTGNNALTLSLNDVLALGQTSLFVDDDHVQLMI
NGNAGDVVNLNDQLSGNNTPGDWSAQGDVTVGGVIYNVYGHSAVDAELLVQQGVTTNLV
NT seq
5040 nt
NT seq
+upstream
nt +downstream
nt
ttgaatacaaacgcagtgaacgtcgccatcgtggatggcaagaccattacccagaccact
gaattgccgaacgatggttccggcaagcccgttcgcatcaaggccatcgctgatggcaag
tacattctcgccgagggcgacaagggtgtcgcaccgcaaaacatcaccatcaagcgcgtg
ggcaaggacctgcatgttgccctggaaggcacggacctgaaccagccgcagctgatcatc
gaaggcttcttcgatgctcaaggccaactgatcggtgtgggcgaagacggcgcttactac
gagtacatttcctccgacgcggagcaggatcattccgcaccgtttttgatcgatggtatg
tcgtcgccgcaggtgctgggttcggagcagatggtgggctttggcaatggcctggtcact
ggcgtcggtatcggttggttctggccggcgctgctgggtctggcgggtgtcggtttgttg
ggcgcggggtatgcggccagtcgtgatgacgacagtcataaggatgaggttgcggcggcg
cttccggtcaccccaaatcttggcagttccggcgacaacgttggcgaccagaccggcccg
ttagtgagcggcgaggcgactgatgacaccaccccgacgttcaatggggtgggtacgcct
ggcaataccatcattgtctacgacggcgacgaaattatcggcgaagcgatcgtcggagat
gacggtgcatggacgttcactccagacccggcattgggtggcggtgcgcacgaaatcatc
ttcgttgaagaggatccgcagggtcatcagagcgctccctccgaaggcttcgagttcatt
gtggatatcacggcacctggcaaatcaatgattgtcgatgtgctcgacaatgccggtgat
cagcaagatcccgtggcacaaaacggtttcacggatgacaacactcctacccttcggggg
cgtgctgaacccggtgcgacggtcgagatttttgccaatggggtaaaaattggcgaagcg
ccggtcgatgccgccggtaactggtcgttcagcccgacgcaagcgctctctgatggaact
tacgagttctcggcagtcgctgtggatgcagccggtaatcgtgggttggcttcagacccc
tatgtgctgactatcgatgcgaccgccccgggcaagccgggtgagggtggcaatggtggc
atcgacagcgtggtcgatgatgtcgagcctggcgccggtcagatcgccaacggcggctat
accaacgacactactccgaccctgggtgggggcaatcaacaaccgggcgacacggtgatc
atcagcgacaacggtgtgatcatcggcagcgcagttgtcgatgccaatggcaactggacg
tttacgcccgaaacgccgctcatcgatggcactcataacctgaccattgttgtcaccgat
tctgccggaaacagcagcgaggcttccgatccgtattgggtgaacgttaaaaccgaggcc
cctggcaaaccgggcgaaggtggcaacggcggcattgacagcgtgattgatgacgttgat
tcgggccttggtcagatcgccaatggcggcctgaccaacgacaccaccccgaccctgagt
ggcggcaatcaacggccaggtgacacggtgaccatcagcgacaacggcaccgtcatcggc
agcgctattgttgacgccgatggcaactggtcgttaacacctgaagcaccgctcagcgac
ggtactcacagccttaccatggtcgtcagcgatcctgcgggcaatgtcagtgaggcgtcc
gatccttacgtcgtgatcgttgaaaccgtcgcgccgggcaagccgggcgaagacggcaat
ggtggcatcgacagcgtggtcgatgatgttgataccggcatcggccagatcgccaacggc
ggcctgaccaacgacaatactccgaccctgagtggcggcaaccaacagccgggcgacacg
gtgatcatcagtgacaatggcaccgtcattggcagcgctgttgtcgatgccgacggtaac
tggacgtttacgccagttacccctctctctgagggcagccatgaactcaccattgctgtc
agcgaccccgcgggcaacgtcagtgaggcgtccgatccttacagggtgatcgttgaaagc
gttgctccgggcaaaccgggtgagggcggtaatggtggcatcgacagcgttgtcgatgat
gttgactcgggcgtcggccagatcgccaacggtggcctgaccaacgacaccaccccgacc
ctgagtggcggcaaccaacagccgggcgacacggtcatcatcagcgacaacggcactgtc
atcggtagcgctgttgttgatgccgatggcaactggtcgtttacacctgacacggcgctc
accgacggttctcataacctcaccatgacggtcagcgatcctgcgggcaatgtcagtgag
gcttccgatccttacgtcgtgatcgttgaaaccgtcgcgccgggcaagccaggcgaagac
ggcaatggtggcatcgacagcgtggtcgatgatgttaataccggcatcggtcagatcgcc
aatggcggtttgaccaacgatgccactccgaccctgagtggcggcaaccaacagccgggc
gacacggtgatcatcagcgacaacggcaccgtcatcggcagcgctgttgtcgatgccagt
ggcaactggacgtttacgcctgacaccgcgctcatcgacggtactcataatttcaccatg
accgtcagcgatccggcaggcaatgtcagcgaagcgtccgatccctatgtggtgttcctt
gaaaccgtggcccccggcaagccgggccaggacggcaatggtggcatcgacagtgtggtc
gatgatgttgactcgggcgtcggccagatcgccaacggcggcctgaccaacgacaacact
ccgaccctgagtggcggcaaccaacagccgggcgacacggtgatcatcagtgacaacggc
aacgtcattggcagcgctgttgtcgatgccgatggcaactggacgtttacacctgacacg
gcgctcaccgacggttctcataacctcaccatgacggtcagcgatcctgcgggcaatgtc
agtgaggcttccgatccttacgtcgtgatcgttgaaaccgtcgcgccgggcaagccgggt
gagggcggtaatggtggcatcgacagcgtggtcgatgatgttgataccggcatcggtcag
atcgccaatggcggtttgaccaacgacaacactccgaccctgagtggcagcaaccaacag
ccgggcgacacggtgatcatcagtgacaacggcaccgttattggcagcgctgttgtcgat
gctgacggcaattggacgtttacccctgaagacgcgctgactgacggtactcacaacctc
acgatggctgtcagcgatcctgcgggcaacatgagtgaggcctccgaaccttacgtggtg
attgttgaaaccgttgcccctgaagttcaaacgactgtcgagagcatgggtaaggatggt
ggcagcagtagcactgacttcataaccaatgacggcacggcgggtcgcttgattgagggc
tccctgacagctgcactggtcgcaggcgaaaaagttcaagtatctacagatgaaggggcc
acatggggcgatgcgctactgaatgctgatggcacctggagctatgttgacctgactgca
cataatggcgactgggttatccagacgcgagtggtagatctggcaggcaacgtcaatgcc
atcagtagtcagaatgtcgatctggataccgttgcaccgagtgcgccgacatccctggag
ttcaatggcgctgttgtaactgttaactttgatggtaatggcatcaatccgggtgacacc
gttcagctcgtcgttggtgaagatcgtttcgaagtgcaactgacacaggcgcagatcgac
gacggcaaggtagacatcaccacgaatgccagcgcagcaatgaccaattcccacgctgtg
ctcattgacgtcgccggcaatgtatctcagcagctgatgcccgttctggagacggttgat
tttgagagtgagacgacgggggaaggaattccggcaggaggcgtaaaggattttggcgcc
tttactttcaattggggtggctggactaccagtaacagccccttgggagtcattgaagga
ggtctgatcgacggcttcaatgcaccgtccgttggcctcagttttgtaacgacgaacacc
cgcgccaacccctcgatctcccttaacggtggagttgaagcaggttcgatgtcatttctg
gttggagacgcctctcgccctattacgttgaactttttgagcgccagtggtgagttggta
catacagtgatgttgccttcagtaccaacaggtgttcaggaagtcaattttcagctccct
gatggcaagacattcaccaccgttgagtttgctggaacagatggtgactggacatgggtc
gacaatttcaaattctccaatggcagtttcgatcatgtagatcctccagctctccaacaa
atcgaaggtacgggtgcctactacggcgatgatgccgacaacgtatttgcgttaaacaat
acggcgcatttgaatgacgccagcagtatcgtcaatggcggtgagggcagggatactttg
agtcttgtaggaacaaaccaagttcttaatctggacaatattgccggaaagctcgagtca
attgaaattgttgacataaccggaacaggtaacaatgcgttaacactctcgctgaacgat
gttctggcgttgggtcagacttctttgtttgtcgacgatgatcatgtgcagttaatgatc
aatggcaatgctggcgatgtcgtcaatttgaatgatcagctatcgggaaacaatacgccc
ggtgactggtcggcccaaggcgacgtgactgtgggcggcgtgatctacaacgtttatggc
cattctgcggtggatgctgagttgctcgttcaacagggggttaccactaacctggtgtaa
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integrated database retrieval system
