Pseudomonas sp. HS6: JJN09_17120
Help
Entry
JJN09_17120 CDS
T09971
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pshs
Pseudomonas sp. HS6
Pathway
pshs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pshs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JJN09_17120 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pshs03019
]
JJN09_17120 (rne)
03009 Ribosome biogenesis [BR:
pshs03009
]
JJN09_17120 (rne)
Enzymes [BR:
pshs01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
JJN09_17120 (rne)
Messenger RNA biogenesis [BR:
pshs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
JJN09_17120 (rne)
Ribosome biogenesis [BR:
pshs03009
]
Prokaryotic type
rRNA processing factors
JJN09_17120 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
UQS12947
LinkDB
All DBs
Position
complement(3805266..3808526)
Genome browser
AA seq
1086 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDF
GSERHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLVAPADMGLIVRTAGLGRSSEEMQW
DLDYLLQLWTAIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALT
FIRQVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSID
INSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKV
RECLEADRARVQIGRISRFGLLEMSRQRLRPSLGESSGIVCPRCSGTGIIRDVESLSLAI
LRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHF
EVQRLRDDSPEAATNQSSYEIAAAAADVEDVQPAAATRTLVRQEAAVKTAPARANAPVPT
EVAAPAPAPAPAPVAAPEPSLFKGLVKSLVSLFATKEEPVAPVVVEKPAAERPARNEERR
NGRQQSRNRNGRRDEERKPREERAPREERAPREPREERQPREAREVREPRESRDEAPVAR
EERAPRAPREERAPRAPREDRKPRGEREERVRELREPLDAAPVAAAAAVAVAAATEERPA
RQPREERAPRPPREERQPRAEQAAAAVAEEETNTSEEQLPEDGSENAEGDRPRRRSRGQR
RRSNRRERQRDANGNVIEGSEESETGENTEAPSTADLAAGLAVTAAVASTVISAPAEAQA
HEQAERATAATLETAPVEAPVVEATTPVEVAAAPEVEVAPVREAQPQVEVAAEPAVTFEA
PVVVEESVVETVAETVTETVREVREEQTAFNWVAEPAVAETPAPVVEAPVVEEAKAAEPV
VVAEPAPVVEAPVTEAPVVAEAPAPVVEAAPVSALTPSGRAPNDPREVRRRKREEERLQK
EAELAAAAAPAAAEPVVAEVVEAAPAPVAEEVAVEAVIAEAPRSVQDAVEHHEQAQEKEH
EPKPLV
NT seq
3261 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgattaacgcaactcaacccgaagagttgcgtgttgcactggtagat
ggccagcgcctctacgacctggacatcgaatccggtgcacgcgagcagaaaaaggccaac
atctataaaggccgtatcactcgcatcgaaccaagccttgaggctgcctttgtcgatttc
ggctccgagcgccacggcttcctgcccctcaaagaaatctcccgcgaatacttcaagaaa
gcccctgaaggccgcgtcaacatcaaggacgtcctgagcgaaggccaggaagtcatcgtt
caggtcgaaaaagaagaacgtggcaacaagggcgcagccctgaccaccttcatcagcctg
gccggtcgttacctcgttctgatgccgaacaacccgcgtgccggcggtatctcccgtcgc
atcgaaggcgaagagcgcaacgaactgcgtgaagcgctgaacggtctggtcgctccagcc
gacatgggtctgatcgtgcgcactgccggcctgggccgcagcagcgaagaaatgcagtgg
gacctcgattacctactgcaactctggaccgctatcaaggaagcgtcgctggatcgttcc
gcgccgttcctgatctaccaggaaagcaacgtcatcatccgcgccatccgcgattacctg
cgccaggacatcggcgaagtgctgatcgacagcgttgaagcccaggacgaagctttgacc
ttcatccgtcaggtgatgccgcagtacgccagcaagatcaagctgtacgaagacagcgtt
ccgctgttcaaccgtttccagatcgaaagccagatcgagaccgctttccagcgcgtagtc
gaactgccttccggcggctccatcgtcatcgatccgaccgaagccctggtgtccatcgac
atcaactcggcgcgcgccaccaaaggcagcgacatcgaagaaaccgccctgcaaaccaac
cttgaagcggccgaagaaatcgcccgtcagttgcgcctgcgcgacatcggcggcctgatc
gtcatcgacttcatcgacatgacccctgccaagaaccagcgcgccgtggaagagaaagtc
cgcgaatgcctggaagccgaccgcgctcgcgtgcagatcggccgcatctcgcgcttcggc
ctgctggaaatgtcccgtcagcgcctgcgcccttcgctcggcgaaagcagcggcatcgtc
tgcccgcgttgcagcggcaccggcatcatccgtgatgtcgaatcgctgtccctggcgatc
ctgcgtctgatcgaagaagaagccctgaaagaccgcactgccgaagttcgcgcccaggtg
ccgatcccggtggccgcgttcctgctcaacgaaaaacgcaactcgatcaccaagatcgaa
ctgcgcacccgcgctcgcatcgttatcctgccgaacgaccacctcgaaactccgcatttc
gaagttcagcgtctgcgtgacgacagcccggaagccgcgaccaaccagtccagctacgaa
atcgctgccgctgccgccgacgtcgaagacgttcagccagccgccgcgacccgcaccctg
gttcgccaggaagctgcggtcaagaccgctccggcccgcgccaacgctccggttccgacc
gaagttgccgctccggctccagctccagcccctgcgccggttgctgcgccagagccaagc
ctgttcaaaggcctggtgaagtcgctggtcagcctgttcgcgaccaaggaagagcctgtt
gctccggttgtggttgaaaaacctgccgccgagcgtccggcccgcaatgaagagcgtcgc
aacggtcgtcagcagagccgcaaccgtaacggtcgccgcgatgaagaacgcaagccgcgc
gaagaacgtgccccacgtgaagagcgcgcaccgcgcgagccgcgtgaagagcgtcagcct
cgtgaagcccgtgaagtccgcgagccacgcgagtcccgtgacgaagcaccggtagcccgc
gaagaacgcgcaccacgcgcccctcgtgaagaacgtgcaccgcgcgctccgcgtgaagat
cgcaagccgcgtggcgagcgtgaagagcgcgtacgtgaactgcgtgagcctctggatgcc
gcaccggtcgccgctgctgccgctgttgcggtagccgccgccactgaagagcgtccagct
cgtcagccgcgtgaagagcgtgctccacgtccaccgcgtgaagagcgtcaaccgcgtgcc
gaacaagccgctgctgccgtagccgaagaagaaaccaacaccagcgaagagcaactgccg
gaagacggttcggagaacgccgaaggcgatcgtccacgccgccgctcccgtggtcagcgt
cgtcgcagcaaccgtcgcgagcgtcagcgtgatgccaacggcaatgtgatcgaaggttcg
gaagagtccgaaaccggcgaaaacaccgaagcaccaagcactgccgatctggctgccggc
ctggcggtgaccgccgctgttgccagcaccgtgatcagcgctcctgccgaagctcaggcc
cacgagcaagctgaacgcgcgaccgctgcaacgctggaaaccgctccagtggaagcgccg
gttgttgaagcaaccactccggtagaagtggctgctgcaccggaagtcgaagtggcgccg
gttcgcgaagctcagcctcaggttgaagtcgctgccgaaccagcggtgaccttcgaagca
ccagtcgttgttgaagagtcggttgtcgaaaccgtcgctgaaaccgtgaccgagaccgtg
cgtgaagttcgcgaagagcaaaccgctttcaactgggtcgccgagccggctgtcgctgaa
accccagcgccagtggttgaagcacccgtggtcgaagaagccaaggctgccgagccagtg
gttgttgctgaaccggcaccggtcgttgaagctccggtaacagaagcgccagtcgtagcc
gaagcgccagccccagtggttgaagccgctccggtcagcgccctgacgccaagtggccgc
gcgccgaacgacccacgtgaagtgcgtcgccgcaagcgtgaagaagagcgtctgcagaag
gaagccgaactggctgccgctgctgctccagccgctgccgagcctgtggttgctgaagtg
gtcgaggcagcccctgccccggtcgctgaagaagttgccgttgaagccgtgattgccgaa
gcaccacgctccgttcaggacgcggtcgagcatcacgaacaggcccaggaaaaagaacac
gagcctaaacctctcgtctga
DBGET
integrated database retrieval system
