Pseudomonas sp. HS6: JJN09_19520
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Entry
JJN09_19520 CDS
T09971
Symbol
tssH
Name
(GenBank) type VI secretion system ATPase TssH
KO
K11907
type VI secretion system protein VasG
Organism
pshs
Pseudomonas sp. HS6
Pathway
pshs02025
Biofilm formation - Pseudomonas aeruginosa
pshs03070
Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:
pshs00001
]
09130 Environmental Information Processing
09131 Membrane transport
03070 Bacterial secretion system
JJN09_19520 (tssH)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02025 Biofilm formation - Pseudomonas aeruginosa
JJN09_19520 (tssH)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
pshs02044
]
JJN09_19520 (tssH)
Secretion system [BR:
pshs02044
]
Type VI secretion system
Imp/Vas secretion system core components
JJN09_19520 (tssH)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_2
AAA_lid_9
AAA
AAA_5
ClpB_D2-small
AAA_22
AAA_16
NACHT
AAA_7
TniB
nSTAND3
Clp_N
Sigma54_activat
NBD_SMAX1
AAA_30
AAA_24
Hpr_kinase_C
AAA_25
CorA
SLFN-g3_helicase
Relaxase_C
Motif
Other DBs
NCBI-ProteinID:
UQS13399
LinkDB
All DBs
Position
complement(4317435..4320092)
Genome browser
AA seq
885 aa
AA seq
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MINVDLQQLIQALDAETRRDLERSAERCVARGGSKILVEDLLLGLLERPNGLLSRALQDA
DVDAGELSAALQSRVEHSASRNPVFAPELVQWLQDALLVANLELGQTSVEDAALILALLR
NPMRYAGSRYQPLLAKLNIDRLKEFALSQQPQAAANGKPAAQGESLLERFTHNLTQQARD
GKLDPVLCRDGAIRQMVDILARRRKNNPIVVGEAGVGKTAIVEGLASRIAAGEVPQVLKG
VELLSLDMGLLQAGASVKGEFERRLKGVIDEVKASPKPIILFIDEAHTLIGAGGNAGGSD
AANLLKPALARGELRTIAATTWAEYKKYFEKDPALARRFQPVQLHEPTVSEAVTILRGLA
QVYEKSHGIYLRDDAVVSAAELSARYLAGRQLPDKAVDVLDTACARVRISLAAAPESLER
LRGELAEGGRQRQALRRDAEAGLLIDHEALDALEARLDEAEDEMVALETQWTEQKQLAER
LLELRQQLAKAREAAAVEPVVTVEEDAEGTVIETVAAEVEEGQSVEALEAQLNETHSALT
AAQVKERLVSFEVCPRLVAEVISAWTGVPLAQLAREHNAKVASFATDLRTRIRGQEQAVH
ALDRSMRATAAGLNKPDAPVGVFLLVGPSGVGKTETALALADLLYGGDRFITTINMSEFQ
EKHTVSRLIGAPPGYVGYGEGGMLTEAVRQKPYSVVLLDEVEKADPDVLNLFYQIFDKGV
ANDGEGREIDFRNTLILMTSNLGSDKISDLCEDGARPTAEVLEETIRPVLSKHFKPALLA
RMKVVPYYPVGGPVLRELIEIKLGRLGERLNRRQLDFSWCQNLVDHLSERCTQSESGARL
IDHLLDQHVLPLVADRLLDAMATGESLKRVHATLDGGASVTCEFA
NT seq
2658 nt
NT seq
+upstream
nt +downstream
nt
atgatcaacgtagacctgcaacaactcatccaggcgctggacgccgaaacccgtcgcgat
ctggagcgttcggccgagcgctgcgtcgcccgtggcggcagcaagattctggtcgaggac
ttgctgctcggcctgctggagcgcccgaacggtctgctctcccgcgcgctgcaagatgcc
gacgttgacgctggcgaactgagcgccgccctgcaatcgcgggtcgagcacagcgcttcg
cgcaacccggtgttcgctccggaactggtgcagtggctgcaagacgcgctgctggtggcc
aaccttgaactgggccagacctcggtcgaagacgcggcgctgattctcgcgctgctgcgc
aacccgatgcgctacgccggcagccgctaccagccgttgctcgccaaactgaacatcgat
cgcctgaaggaatttgccctctcgcaacagcctcaggctgcggccaacggcaagccggcc
gcccaaggtgaatcgctgctcgagcgcttcactcacaacctgacccaacaggcccgcgac
ggcaaactcgacccggtgctgtgccgcgatggcgcgatccgccagatggtcgacatcctc
gcccgtcgccgcaagaacaacccgatcgtggtcggtgaagccggtgtcggtaaaaccgcc
atcgtcgaaggcctggcctcgcgcatcgctgccggtgaagtgccgcaagtgctcaagggc
gtcgagctgctgtcgctggacatgggcctgttgcaggctggcgcgagcgtcaaaggtgaa
ttcgaacgtcgtctgaaaggcgtgatcgacgaggtcaaagcctcaccgaaaccgatcatc
ctgttcatcgacgaagcccacaccctgatcggtgcgggcggcaatgccggcggttccgac
gcagccaacttgctgaaaccggcgctggcccgtggcgaactgcgcactatcgccgcgacc
acctgggccgagtacaagaaatacttcgagaaagacccggcgctggcccgtcgtttccaa
ccggttcagctgcacgaaccgaccgtgagcgaagcggtgaccattctgcgtggcctggct
caggtctacgagaagagccacggcatctacctgcgcgatgacgcggtggtttctgcagct
gagctgtctgcccgttacctcgccggtcggcaactgccggacaaggccgtcgacgtcctc
gacaccgcgtgcgcccgcgttcgcatcagcctcgccgccgccccggaaagcctggagcgc
ctgcgtggtgaactggctgaaggtggccgccagcgtcaagccctgcgccgcgatgccgaa
gccggtctgctgatcgaccacgaagcgctggatgcactggaagcgcgtctggacgaagcc
gaagacgaaatggtcgcactggaaacccagtggaccgagcagaaacaactggccgagcgc
ctgctggaactgcgtcagcaactggccaaggctcgtgaagccgctgcggtcgagccggtg
gtcactgttgaggaagacgccgaaggcaccgtgatcgaaaccgttgccgctgaagttgaa
gaaggccaaagcgtcgaagcgctggaagcgcaactcaacgaaacccacagcgccctgacc
gccgctcaggtcaaggagcgtctggtcagcttcgaagtctgcccgcgtctggtggccgaa
gtgatcagcgcctggaccggcgtgccgctggcgcaactggcccgtgaacacaacgccaaa
gtcgcaagcttcgccaccgacctgcgcacccgcatccgtggtcaggaacaagccgtgcac
gcactggatcgctcgatgcgcgccaccgctgccggcctgaacaagcctgacgcaccggtc
ggcgtgttcctgctggtgggcccgagcggcgtcggcaagaccgaaaccgcactggcactc
gccgacctgctgtacggcggcgaccgtttcatcaccaccatcaacatgtccgagttccag
gagaagcacaccgtttcccgcctgatcggtgcgccgccaggctacgtcggttacggcgag
ggcggcatgctcaccgaagccgtgcgccagaaaccgtactcggtggtgctgctcgatgag
gtcgagaaggccgacccggacgtgctcaacctgttctaccaaatcttcgacaaaggcgtg
gccaacgacggcgaaggacgcgaaatcgacttccgcaacacgttgatcctgatgacctcg
aacttgggcagcgacaagatcagcgacctctgtgaagacggcgcgcgtccgactgccgaa
gtgctggaagaaaccattcgcccggtgctcagcaaacacttcaaaccggcgctgctggcg
cggatgaaagtggtgccgtattacccggtcggtggcccggtgctccgagagctgatcgag
atcaaactcggtcgtctgggcgagcgcctgaaccgtcgtcagctggatttcagctggtgc
cagaaccttgtcgatcacctgtccgagcgctgcacccagagcgaaagcggtgcgcgcctg
atcgaccacttgctcgaccagcacgtattgccgctggtggccgaccgcttgctcgacgcc
atggccaccggtgaaagcctcaagcgcgtgcatgcgacgctcgacggtggcgccagcgtg
acctgcgagttcgcctga
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