Pseudomonas sp. HS6: JJN09_19825
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Entry
JJN09_19825 CDS
T09971
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pshs
Pseudomonas sp. HS6
Pathway
pshs03420
Nucleotide excision repair
pshs03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pshs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JJN09_19825 (uvrD)
03430 Mismatch repair
JJN09_19825 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pshs03400
]
JJN09_19825 (uvrD)
Enzymes [BR:
pshs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JJN09_19825 (uvrD)
DNA repair and recombination proteins [BR:
pshs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JJN09_19825 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
JJN09_19825 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
PcrA_UvrD_tudor
AAA_11
AAA_22
RHH_1
Motif
Other DBs
NCBI-ProteinID:
UQS13455
LinkDB
All DBs
Position
4392215..4394398
Genome browser
AA seq
727 aa
AA seq
DB search
MRDDLSLLLNSLNDAQRQAVAAPVGRQLVLAGAGSGKTRVLVHRIAWLIQIENASPHSIL
SVTFTNKAAAEMRHRIEQLLGINPAGMWVGTFHGLAHRLLRAHWQEAGLSQTFQILDSDD
QQRLVKRVIRELGLDEQRWPARQAQWFINGQKDEGLRPQHIQASGDLYLATMRGIYEAYE
AACLRAGVIDFSELLLRALDLWRDHPGLLAHYQKRFRHILVDEFQDTNAVQYAWLRLLGK
GGDSLMVVGDDDQSIYGWRGAKIENIHQYSSDFPDSVTIRLEQNYRSTAGILKAANALIA
NNTGRLGKELWTDGGDGEAINLYAAFNEHDEARYVVETIESALKTGLARSDIAILYRSNA
QSRVLEEALLRERIPYRIYGGQRFFERAEIKNAMAYLRLLEGRGNDAALERVINVPARGI
GEKTVEAIREHARHSDVSMWEAMRQLVANKGLTGRAAGALGAFIELIENLAAKCAEMPLH
LMTQTVIEQSGLIAYHEAEKGEKGQARVENLEELVSAARNFENTEEDEDLTPLAAFLGHA
SLEAGDTQADEHEDSIQLMTLHSAKGLEFPYVFLVGMEEGLFPHKMSLEEPGRLEEERRL
AYVGITRAMQNLVMTYAETRRLYGSETYNKVSRFVREVPKGLIQEVRLSNSVSRPFGGNQ
SMSGSNLFSGAEIPETGLSLGQAVRHSIFGDGVILNFEGAGAQARVQVNFSEGSKWLMLG
YAKLEAI
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgatgatctctcccttctgctgaactccctcaacgatgcccaacgccaggccgta
gcggctcccgttggtcgtcaattggtcctggccggtgccggctccggcaaaacccgagtg
ctggtgcaccgtatcgcctggttgatccagatcgaaaacgcctcgccccactcgatcctg
tccgtgaccttcaccaataaggctgctgccgagatgcgtcaccgcatcgagcaattgctg
gggatcaacccggccggcatgtgggtcggcaccttccacggcctggcgcaccgcttgttg
cgggcgcactggcaggaagccgggctgagccagaccttccagattctcgacagcgatgac
cagcaacgcctggtcaaacgggtgatccgcgagctggggctggacgaacagcgctggccg
gcccgtcaggcccaatggttcatcaacgggcagaaagacgaaggtctgcgcccgcaacac
attcaggccagcggtgatctgtacctggccaccatgcgcggcatctatgaagcctacgag
gctgcctgcctgcgcgccggcgtcatcgacttctccgaattgctgctgcgcgccctcgac
ctgtggcgcgaccatccgggcctgctggcgcattaccaaaagcgtttccgccacattctg
gtggacgagttccaggacaccaacgccgtgcagtacgcctggttgcgtctgctgggcaag
ggcggcgacagcctgatggtggttggcgacgacgaccagtcgatctacggctggcgcggc
gcgaaaatcgagaacattcatcagtactcttccgacttcccggattcggtgaccattcgt
ctggagcagaactaccgctccaccgccggcatcctgaaagccgccaacgccctgatcgcc
aacaataccgggcgcctgggcaaggaactgtggaccgacggcggcgacggcgaagcgatc
aacctgtacgccgcgttcaacgaacacgatgaggctcgctacgttgtcgaaaccatcgaa
agcgcgctgaaaaccggcctggctcgcagcgatatcgcaattctctaccgctccaacgcc
caatcacgcgttctggaagaagccttgctgcgcgaacgcattccgtaccgtatctatggc
ggccagcgcttcttcgaacgggcggaaatcaagaacgccatggcctacctgcgtttgctg
gaaggtcgcggcaatgatgcagcgctggaacgggtcatcaacgtccctgcccgcggcatc
ggtgagaaaaccgtcgaagcgattcgcgagcatgcccgtcacagcgatgtgtcgatgtgg
gaagccatgcgccaactggtagccaataaaggcctcaccggtcgcgcagcgggcgccctc
ggcgcatttatcgagctgatcgagaacctcgccgccaagtgcgccgagatgccgttgcac
ctgatgactcagaccgtcatcgagcaatccggcctgatcgcttaccacgaagcggaaaaa
ggcgagaaaggccaggcccgggtggaaaaccttgaggaactggtcagcgccgcgcgcaat
ttcgagaacaccgaagaagacgaagacctgacgccactggcggcgttcctcggccacgct
tcgctggaggccggcgacacccaggccgacgagcacgaagacagcattcagttgatgacc
ctgcacagcgccaagggcctggaattcccttacgtgttcctggtgggcatggaagaaggc
ctgttcccgcacaagatgagcctggaagagccgggacgccttgaagaagaacggcgcctg
gcctatgtcggcatcacccgggcgatgcagaacctggtgatgacctacgctgaaacccga
cgtttgtacggcagcgaaacctacaacaaggtgtcgcgattcgtacgggaagtgccgaaa
ggcctgattcaggaagtgcgcctgtcgaacagcgtcagccgaccgttcggcggcaaccag
tcgatgagcggcagcaacctgttcagcggtgccgagatcccggaaaccggcctcagcctc
ggccaggccgtgcggcactcgatctttggcgacggcgtgatcctcaacttcgagggcgcc
ggcgcccaggcgcgggttcaggtgaacttcagcgaaggcagcaagtggctgatgctgggt
tacgcgaagctggaagcgatctaa
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