Pseudomonas sp. HS6: JJN09_20855
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Entry
JJN09_20855 CDS
T09971
Symbol
dbpA
Name
(GenBank) ATP-dependent RNA helicase DbpA
KO
K05591
ATP-dependent RNA helicase DbpA [EC:
5.6.2.6
]
Organism
pshs
Pseudomonas sp. HS6
Brite
KEGG Orthology (KO) [BR:
pshs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pshs03009
]
JJN09_20855 (dbpA)
Enzymes [BR:
pshs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
JJN09_20855 (dbpA)
Ribosome biogenesis [BR:
pshs03009
]
Prokaryotic type
rRNA helicases
JJN09_20855 (dbpA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
CMS1
PRAI
Motif
Other DBs
NCBI-ProteinID:
UQS13657
LinkDB
All DBs
Position
4629773..4631158
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AA seq
461 aa
AA seq
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MTTIATAFNTLPLSAAMLANLDSLGYAQMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAF
GIGLLNPINPRYFGCQALVICPTRELADQVAKEIRRLARAEDNIKVLTLCGGVSFGPQIG
SLEHGAHIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIEDIIEQTPAR
RQTLLFSATYPVGIKQLASKFMRDPQTVKAEAFHDDTQIEQRFYEISPEERMSAVTKVLH
HFRPASTVAFCFTKQQVQETVDHLTSKGISAVGLHGDLEQRDRDQVLAMFANRSTSVLVA
TDVAARGLDIDALDMVINVELARDSEIHIHRVGRTGRAGEKGIAVSLVAPSEAHRAQAIE
QLQKTPLNWDQVDNLKSQGGAPLQPPMSTLCIGGGRKDKVRPGDILGALTGDAGIPGAQV
GKIAIFDFQSYVAVERTVVMQALQRLNNGKIKGRSLRVRVL
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
gtgaccaccatcgccaccgcttttaatactttgccgctgtccgccgccatgctggctaac
ctcgactccctcggttatgcccagatgacgccgatccaggcgcagagcttgccggtgatc
ctcaaggggatggacctgatcgcccaggccaagaccggcagcggcaagaccgccgcgttc
ggcatcggcctgctgaacccgatcaatccgcgctacttcggctgccaggcgctggtcatt
tgcccgacccgtgagctggccgaccaggtcgccaaggaaatccgtcgtctggcccgtgcc
gaagacaacatcaaggtcctgaccctgtgcggcggcgtgtcgttcggcccgcagatcggt
tcgctggagcacggcgcgcacatcatcgtcggcactccgggtcgtatccagcagcacttg
cgcaagggttcgttggtcctcgacggcctcaacacactgatcctcgacgaagccgaccgc
atgctcgacatgggtttctacgacgccatcgaagacatcatcgagcagaccccggcccgt
cgtcagaccctgctgttctcggccacttacccggtgggcatcaagcaactggcgtcgaag
ttcatgcgcgatccgcaaacggtgaaagccgaagcgttccacgacgacacccagatcgaa
caacgcttctacgagatttcccctgaagagcgcatgagcgcggtgaccaaagtcctgcac
cacttccgcccagcctctaccgtggcgttctgcttcaccaaacagcaagtgcaggaaacc
gtcgatcacctgacctccaagggcatttccgccgtcggcctgcacggcgatctggaacaa
cgcgaccgcgatcaggtattggcgatgttcgccaaccgcagcacttcggtactggttgcc
actgacgttgccgcccgtggtctggacatcgatgcactggacatggtgatcaacgtcgaa
ctggcccgcgactcggaaatccacattcaccgcgtcggccgtaccggtcgtgccggcgag
aaaggtatcgcggtcagcctggtggcgccgtccgaagcgcaccgcgcgcaagccatcgaa
caactgcagaaaaccccgctgaactgggatcaggtggataacctgaaatcccagggcggt
gccccgctgcaaccgccgatgagcacgctgtgcatcggtggcggccgcaaagacaaggtg
cgtccgggcgacattctcggcgcactgaccggcgatgccggcatccctggcgctcaggtt
ggcaagatcgcgatcttcgacttccagtcctatgtggcggttgagcgcaccgtggtcatg
caggcgctgcagcgtttgaacaacggcaagatcaagggtcgttcgctgcgcgttcgcgtt
ttgtaa
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