Pseudomonas sp. HS6: JJN09_21015
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Entry
JJN09_21015 CDS
T09971
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pshs
Pseudomonas sp. HS6
Pathway
pshs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pshs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JJN09_21015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pshs03019
]
JJN09_21015
Enzymes [BR:
pshs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JJN09_21015
Messenger RNA biogenesis [BR:
pshs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JJN09_21015
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
P-loop_SecA
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UQS13689
LinkDB
All DBs
Position
4665139..4667037
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AA seq
632 aa
AA seq
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MSFASLGLSEALVRAINDAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKIYARDLKFVSACIFGGVGMN
PQVQAMSRGVDVLVACPGRLLDLCGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR
LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASHKRALL
AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALADFKAGEV
RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERMTKQKIADGDLMGFDASTIEAEKPEVRERPDMRNPRNARGPRGDGPNGGGGGGG
RKDKGKDKGKEKPAGERGERGERPARQQKPREGTPAREQRQPSQPPRAAADRAPDEFLDD
DVDNFGNRVDYVPKQAPAGGRGRRPGAPAQGAGSGAPRTGGQPQGRQNGPRNSNGSSTGT
PPAKRSGPRNGAPRDGAPREGQGRRDESSSRNRRPARDDQQRAEPAVQNPRSSGPKIMHK
ESKADRFPTPEQLDQLPSRPRGEKPALLTRNR
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctttggtccgcgccatcaatgatgcgggc
tataccgagcctactccggtgcaacagcgggccattcccgccgtgttgcaaggtcgcgac
ctgatggttgcggcacagacaggtaccggtaaaaccggcggtttcgccctcccgatcctg
gagcggctgttccccaacggtcacccggacaaatcccagcgtcatggcccgcgccaaccg
cgcgtactggtcctgacaccgacccgcgaactcgcggctcaggttcacgagagcttcaag
atctatgcccgtgacctgaaattcgtcagcgcctgcatcttcggcggcgtcggcatgaac
cctcaggttcaagccatgtcccgcggcgtggacgtactggttgcctgcccgggtcgtctg
ctcgacctgtgcggccaaggcagcgtcgacctgtcccacgttgaaatcctcgtgctggac
gaagccgaccgcatgctcgacatgggcttcgtccatgacgtgaagaaagtcctcgcgcgt
ctgccggccaaacgccagaacctgctgttctcggcgaccttctccaaagacatcaccgac
ctcgccggcaagctgctgcacaacccggaacgcatcgaagtgacgccgccgaacaccacg
gtcgagcgcatcgaacaacgcgtattccgtctgccggccagccacaagcgtgcgctgctg
gcgcacctgattaccgctggcgcctgggaacaggtactggtgttcacccgcaccaagcac
ggtgccaaccgtctggccgaatacctggacaaacacggcctgccggctgtggcgatccac
ggcaacaagagccagaacgcccgcaccaaagccctggccgacttcaaggccggcgaagtg
cgcattctggtagcgaccgatattgccgcccgtggcctggacatcgaccagttgccacac
gtggtcaacttcgaactgccgaacgtcgatgaagactacgtgcaccgtatcggccgtacc
ggccgtgccggtcgttcgggcgaggcgatctcgctggtcgcgccggacgaagaaaaactg
ctgaaaagcatcgaacgcatgaccaagcagaaaatcgccgacggcgacctgatgggcttc
gatgccagcaccatcgaggccgagaagcctgaagtgcgcgagcgtccggacatgcgcaac
ccgcgcaatgcccgtggcccacgcggcgacggtccgaatggcggcggtggcggcggcggt
cgtaaagacaaaggcaaagacaagggcaaggaaaaaccggccggcgaacgcggtgagcgt
ggcgagcgtccagcccgtcaacagaagccacgcgaaggcaccccggcccgcgaacagcgt
cagccgagccagccgccacgcgccgccgctgatcgtgctccggacgaattcctcgatgac
gatgtggataacttcggtaaccgcgttgattacgtgccaaagcaggctccggccggcggc
cgtggtcgtcgtcctggtgctccggcgcaaggcgcaggttcgggcgcaccacgcaccggt
ggccagccacaaggtcgccagaacggtccgcgcaacagcaacggttcgagcaccggcacc
ccaccggccaaacgcagcggcccgcgcaacggcgctcctcgtgacggtgccccgcgtgaa
ggccagggccgtcgcgacgaatcctcatcgcgcaaccgccgcccggcccgtgacgatcag
caacgtgctgaacctgccgtgcagaacccgcgcagcagcggcccgaagatcatgcacaag
gaatcgaaagccgaccgcttcccgacgcctgagcagctcgatcaactgccaagccgccca
cgcggtgaaaaaccggccttgctgactcgcaaccgctga
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