Pseudomonas sp. HS6: JJN09_22355
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Entry
JJN09_22355 CDS
T09971
Name
(GenBank) 3'-5' exonuclease
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
pshs
Pseudomonas sp. HS6
Pathway
pshs03030
DNA replication
pshs03430
Mismatch repair
pshs03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pshs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JJN09_22355
03430 Mismatch repair
JJN09_22355
03440 Homologous recombination
JJN09_22355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pshs03032
]
JJN09_22355
03400 DNA repair and recombination proteins [BR:
pshs03400
]
JJN09_22355
Enzymes [BR:
pshs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
JJN09_22355
DNA replication proteins [BR:
pshs03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
JJN09_22355
DNA repair and recombination proteins [BR:
pshs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
JJN09_22355
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
DUF8678
Ribosomal_L26
RNase_H_2
DUF1059
Motif
Other DBs
NCBI-ProteinID:
UQS13943
LinkDB
All DBs
Position
complement(4938007..4938612)
Genome browser
AA seq
201 aa
AA seq
DB search
MERIAVIDFETTGISPSSSCRATEIAVVMLENGRIVERYQSLMNAGVRVPAFIEQLTGIS
NAMLRTAPSAEQVMNEVNEFVGCTPLLAHNAAFDQKFWDFELGRIKRTRLQNFACSLLLA
RRLMPAAPNHKLGTLTTFAQLPHTGQAHRAMADAEMAANLLAHLADELRRKHGVRELSHD
LLCKLQKVPAAKVGEHLQRYR
NT seq
606 nt
NT seq
+upstream
nt +downstream
nt
ttggaacgcattgcagtcatcgactttgaaaccaccggcatctcgccgagcagcagctgc
cgggccacggaaattgccgtggtcatgctggaaaacggccgcatcgtcgagcgttaccag
agcctgatgaacgcgggcgtacgcgtcccggccttcatcgaacaactcaccggcatcagc
aacgccatgctgcgcaccgcgccctcggccgagcaggtgatgaacgaagtcaacgaattc
gtcggctgcacaccgctgctggcgcacaacgccgccttcgaccagaagttctgggacttt
gaactgggccggatcaaacgtactcgtttgcagaattttgcgtgctcgctgttgctggct
cgccgtttgatgccagcggcgccgaaccacaagctcggcacgctcaccaccttcgcccaa
ctgccgcataccggccaggcgcacagggcgatggcggatgcggagatggcggcgaatttg
ctggcgcatctggcggatgaattgcggcgcaagcatggggtgcgggagctatcgcacgac
ctgctgtgcaaattgcagaaggtgccggccgccaaggtcggcgagcacctgcaacgctat
cgctga
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