Pseudomonas sp. HS6: JJN09_22930 Help Entry JJN09_22930       CDS       T09971                                  Name (GenBank) DEAD/DEAH box helicase   KO K03724   ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] Organism pshs  Pseudomonas sp. HS6 Brite KEGG Orthology (KO) [BR:pshs00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:pshs03400]     JJN09_22930 Enzymes [BR:pshs01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.4  DNA 3'-5' helicase      JJN09_22930     5.6.2.6  RNA 3'-5' helicase      JJN09_22930 DNA repair and recombination proteins [BR:pshs03400]  Prokaryotic type   Other factors with a suspected DNA repair function    DNA helicases     JJN09_22930 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DEAD_assoc WH_Lhr WH4_Lhr DEAD Helicase_C WH3_Lhr ResIII Cas3-like_C_2 HTH_IclR AAA_22 GntR Motif Other DBs NCBI-ProteinID:  UQS14053 LinkDB All DBs Position 5062281..5066576 Genome browser AA seq 1431 aa AA seqDB search MNLPLPKDVALAGFHPAVSAWFSRTFATVTAAQARAWPLIRQRRSTLIAAPTGSGKTLTA FLAVLDDLVHRGLESADGLPDETLVVYVSPLKALSNDIRINLQNPLAGISDQLRQMDLPA LEITTAVRTGDTPQKERAAMRKSAPHILVTTPESLYVLLGSESGRKMLGTTRTVIVDEIH AIAAGKRGSHLALSLERLQALCAEPLTRIGLSATQKPIDAVARFLVGHDRPCEIIDIGHA RPRDLGIEVPPVPLSAVMANDVWELVYDRLATLAREHRTTLIFVNTRRLAERLSRHLSER LGKHAVAAHHGSLAKEFRLDAEQRLKRGVLQVLIATASLELGIDIGEVNLVCQIASPRSI AGFLQRVGRSGHQVGGTPKGRLFATTRDDLIECAALLDCVRRGELDTLHIPEAPLDVLAQ QIIAEVSCQEWAEDELLALFRRAEPYARLDEKHYQALLSMLAEGYNGRQGIRSAYLHRDA VSRTLRGRRGARLTAVTSGGTIPDNADYSVLLEPQGLNIGSVNEDFAVESIAGDVFQLGN TSYRILRVETGKVRVEDAQGQPPTIPFWLGEAPGRSAELSMAVARLQAQLDELLSASPGN LQPALDWLTATLGLDLASAEQLVDYLARARLTLGALPSQDTLLMERFFDESGGTQLIIHS PFGSRINRAWGLALRKRFCRTFNFELQAAASEDAIVLSLSTSHSFELDEVWRYLHSNSAE HILTQAVLDAPLFGVRWRWNAGVALALPRYTGGRKVAPQLQRMKSEDLIASVFPDQIACL ENLAGEREIPEHPLVEQTLDDCLHEAMDSEGWLNLLRRMERGEVRLIARDLPAPSPLAAE ILSARPYTFLDDAPLEERRTQAVLNRRWSDPQSTDDLGALDADAINAVREEAWPTPNSAD EMHEALMSLACISDNEVEVNPQWRDWLNTLAETGRACRLQIDPEHSLWLARERLTCLQAL YPQAHSALPALPGFDETWAADDALIELIRARLGAFGPLPLAAIVEPLALMPTSVHQALAH LEREGYVLRGQFTPGLKAEEWCERHLLARIHRYTVKRLRREIEPVALQDFMRFLFDWQHL SPSTRGQGSAVLPAIVGQFEGYPAAASAWDSDILPARLKDYSPSWLDDLCRSGKLVWMRL SARQKTSGTALRSTPVVLLPRSQVGLWSSLAEQAPISELSPKTQKVFEALSQHGALFFDE LIHEAHLLRTELEIALQELVGVGLVNADSFAGLRALITPASKRQQRSSRRGRGAFVGGMD DAGRWALLRRGSAVENSQTASPETLEHIAMTLLRRYGVVFWRLLEREADWLPSWRELLRT FHRLEARGEIRGGRFVSGLAGEQFALPEAIPLLREVRRRPHDGSLIAVCGVDPLNLAGTL LPGAKVPALTSNRLVYRDGLPVAAEVAGKQHFWVELDQVSMEQVRSKLIRH NT seq 4296 nt NT seq  +upstreamnt  +downstreamnt atgaatctgcccctccccaaggacgtggccctggcaggctttcaccccgccgtcagcgcc tggttcagccgcacattcgcgacggtcaccgccgcccaggcccgcgcatggccgttgatc cgccagcgccgctcgacgctgatcgccgcacccaccggttccggcaagaccctcaccgct ttcctcgccgtgctcgacgacctcgtccaccgtggcctggagagcgcagacggtctcccc gacgaaacgctggtggtctatgtctctccgctaaaggcgctatccaacgacatacgcatc aacctgcaaaacccgctggccggaatttccgatcagttgcgtcaaatggatcttcccgcg ctggaaatcaccactgccgtgcgcaccggcgacactccacagaaagaacgcgccgccatg cgcaaaagcgcgccgcacattctggtgaccaccccggaatcgctctacgtgctgctcggt tccgagtccgggcgcaaaatgcttggcaccacacgtaccgtgatcgtcgatgaaatccac gccatcgccgccggcaaacgcggcagtcatctggccttgagcctcgaacgcttgcaagcg ttatgcgccgaaccactgacccgcatcggcctgtcggccacgcaaaagccgatcgacgcg gtcgcgcggtttctggtgggtcatgaccgtccgtgcgaaatcatcgacatcggccacgcc cgtccacgggatctgggcatcgaagtgccgccggtgccgttgtcagccgtgatggccaat gacgtttgggagctggtctacgaccgcctcgccacgctcgcccgtgaacaccgcaccacg ctgattttcgtcaacacccggcgtctggctgaacgcttgagtcgacatctgagcgaacgc ctcggcaagcacgcggtggccgcgcaccacggcagtctcgccaaggagtttcgcctcgac gccgagcagcgcctcaagcgcggcgtgctgcaggtgctgatcgccaccgcatcgttggaa ctggggatcgacattggcgaggtcaaccttgtgtgccagattgcttcgccgcgttcgatt gccggttttctgcaacgggtcggccgctccggacaccaggtcggcggcacgcccaagggg cgcctgtttgccaccactcgcgacgacctgatcgagtgcgccgcgctgctcgactgcgtg cgccggggtgaactcgataccctgcacatcccagaagcgccgctggatgtgctggcccag cagatcatcgccgaggtcagttgtcaggaatgggccgaagacgaattgctcgcactgttc cgccgagccgagccctatgcccgcctcgacgaaaaacattatcaggcgctgctgagcatg ctcgccgagggctacaacggtcgtcagggcatccgtagcgcctatctgcatcgcgacgca gtaagccggactttgcgaggacgacgcggtgcgcgactgacagccgtgaccagcggcggc accattcccgacaacgccgactacagcgtgttgctggaacctcagggtttgaacatcggc agcgtcaacgaagacttcgccgtagaaagcattgctggcgatgtgttccagctcggcaac acctcctatcgaattctgcgggtggaaaccggcaaggtgcgggtcgaagatgcccagggc cagccgccgaccatcccgttctggctcggcgaagcgcccggtcgcagcgccgaactgtcg atggccgtggcacgcctgcaagcacagctcgacgaattgctgagtgcgagtcccggcaac ctgcaaccggccctcgactggctgaccgcaaccctcggtctggatctggccagcgccgaa cagcttgtggattatctggcccgcgcccgtctcaccctcggcgccctgccgtcgcaagat acgttactgatggaacggtttttcgacgagtccggcggcacccaactgatcatccattcg cctttcggcagccgcatcaaccgtgcctgggggctggccctgcgcaagcgcttctgtcgc accttcaacttcgaattgcaggccgccgccagtgaagacgcgatcgtgctgtcgctgtcc accagccacagtttcgaactggacgaggtctggcgttacctgcacagcaacagcgccgag catatcctgactcaagcggtgctcgatgcgccgttgttcggtgtgcgctggcgctggaat gcgggcgtggcactggccctgccgcgctacacgggcggacgcaaagtcgcgccgcaattg cagcggatgaaaagcgaagacctgatcgccagcgtgtttcccgatcagatcgcctgcctg gaaaacctcgccggcgaacgggaaattcccgagcacccgctggtggagcagaccctcgac gattgcctgcacgaggcgatggacagtgagggctggctcaatctgctgcggcgcatggag cgcggcgaagtgcggctgatcgcccgtgaccttccggcgccctcgccgctggcggcggaa atcctcagcgcccgcccctacacctttctcgacgacgcgccgctggaagagcgtcgcact caggctgtgctcaaccgccgctggagcgatccgcaatcaaccgatgatctcggcgcgctg gatgccgatgcgatcaacgctgtgcgcgaagaagcctggccgacaccgaacagcgccgat gaaatgcacgaagcgctgatgagcctggcctgcatcagcgacaacgaagtcgaggtcaat ccgcagtggcgcgactggctgaataccctggccgagaccgggcgagcctgccgattgcag atcgatcccgagcattcactgtggctggcgagagaacgcctgacctgtctgcaagcgctt tatccacaggcgcattcggcactgccagcgttgcccggtttcgacgaaacatgggcagcc gatgatgcactgatcgaattgatccgcgcgcggctcggcgcattcggtccgctaccgctg gcggcgattgtcgaacctctggccttgatgccgacctctgtccatcaagccctcgctcat ctggagcgcgagggttatgtactgcgcggccagttcacgccgggactgaaggcggaagaa tggtgcgaacggcatctgctggcgcgaatacaccgctacaccgtcaagcgcttgcgccgg gaaatcgaaccggtggcgttgcaggatttcatgcgcttcctgttcgactggcagcacttg tccccgtccacccgaggtcagggcagcgccgtgttgccagcgattgtcggtcagttcgaa ggctatccggctgctgcttcggcgtgggacagcgacatccttcccgcgcgactcaaggac tattcaccaagctggctggatgatctgtgccgcagcggaaaactggtgtggatgcgcctc agcgcccggcaaaagaccagcggtacagcgttgcgcagtacgcccgttgtgctgttgccg cgcagtcaggtcgggttgtggagctcgctggccgagcaggcgccgattagtgaactgtcg cccaaaacgcagaaggtcttcgaggctctcagccagcacggggcgctgtttttcgatgag ctgattcatgaagcgcacctgctgcgaacagaactggaaatcgccttgcaggagctggtc ggcgtcgggctggtgaatgccgacagctttgccgggttgcgagcacttatcaccccggcg agcaagcgccagcagcgcagcagtcgacgcggacgcggggcatttgtcggaggcatggac gatgccgggcgctgggcccttttacgccgcgggtcggctgtggaaaacagccagactgcg tcgcccgaaaccctcgaacacatcgccatgactttgttgcgccgttacggcgtagtgttc tggcgtctgctggagcgtgaggcagactggctgccgagctggcgcgaacttctgcgcacc tttcatcgactggaggcacggggcgagattcgtggcgggcggtttgtcagtggtctggcc ggcgaacaattcgccctgcccgaggcgattccgctgttgcgcgaagtacgccgccgccct catgacggtagtctgatcgcggtgtgtggcgtcgatccgctgaacctcgccggcaccttg ttgcccggcgcgaaagtaccagcactgacgagcaatcggttggtgtatcgcgacggcttg ccggtcgctgccgaggtcgcgggcaagcagcatttctgggtggagctggatcaggtttcc atggagcaggtgcgcagcaaactgatccggcattga

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