Pseudomonas sp. HS6: JJN09_23045
Help
Entry
JJN09_23045 CDS
T09971
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
pshs
Pseudomonas sp. HS6
Pathway
pshs03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pshs00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JJN09_23045 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pshs03021
]
JJN09_23045 (rpoA)
03400 DNA repair and recombination proteins [BR:
pshs03400
]
JJN09_23045 (rpoA)
Enzymes [BR:
pshs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JJN09_23045 (rpoA)
Transcription machinery [BR:
pshs03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JJN09_23045 (rpoA)
DNA repair and recombination proteins [BR:
pshs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JJN09_23045 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
AMIN-like
Motif
Other DBs
NCBI-ProteinID:
UQS14076
LinkDB
All DBs
Position
complement(5091237..5092238)
Genome browser
AA seq
333 aa
AA seq
DB search
MQISVNEFLTPRHIDVQVVSPTRAKITLEPLERGFGHTLGNALRRILLSSMPGCAVVEAE
IDGVLHEYSAIEGVQEDVIEILLNLKGLAIKLHGRDEVTLTLSKKGSGVVTAADIQLDHD
VEIVNPDHVIANLASNGALNMKLTVARGRGYEPADSRQSDEDESRSIGRLQLDSSFSPVR
RIAYVVENARVEQRTNLDKLVIDLETNGTLDPEEAIRRAATILQQQLAAFVDLKGDSEPV
VVEQEDEIDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRTEVELLKTPNLGKKSLT
EIKDVLASRGLSLGMRLDNWPPASLKKDDKATA
NT seq
1002 nt
NT seq
+upstream
nt +downstream
nt
atgcagatttcggtaaatgagttcctgacaccccgccatattgatgtgcaggttgtcagt
ccaacccgcgccaagatcactctcgagcctctcgagcgtggtttcggccacaccctgggc
aacgcgctgcgccgcatcctgttgtcctcaatgcccggctgcgcagtagtcgaggccgag
attgacggtgtgctccacgagtacagcgccatcgaaggtgtacaggaagacgtaattgaa
atcctgttgaaccttaaaggtctggctatcaagctgcacggccgtgacgaagttacgctg
accttgtcgaagaagggttcgggggtggttaccgctgccgatattcagctggatcatgat
gtcgagatcgttaatcccgatcacgtaatcgctaacctggcgtctaacggcgccctgaac
atgaagctcaccgtagctcgtggtcgtggttatgaaccagcagactcgcgtcagagcgat
gaagacgaaagtcgcagcatcggtcgcttgcagcttgactcttcgttcagcccggttcgc
cgtatcgcatacgtggtggaaaacgcccgtgtcgagcagcgtaccaacctggacaagctg
gttattgatctggaaaccaacggtaccctggatcctgaagaggctatccgtcgtgctgca
accattctgcaacagcagttggctgcgttcgtcgacctcaaaggtgacagtgagccagtg
gttgtcgagcaggaagacgagatcgatccgatcctgcttcgcccggttgacgatctggaa
ctgactgtacgttcggctaactgccttaaggcggaaaacatctactacatcggtgacctg
attcagcgcaccgaagtagagctgttgaagactccgaacctgggcaagaaatccttgact
gaaatcaaggacgttctggcctcccgcggtctgtccctcggcatgcgcctcgacaactgg
ccgcctgcaagtcttaagaaggacgacaaggcgactgcctga
DBGET
integrated database retrieval system
