Pseudomonas sp. HS6: JJN09_24215
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Entry
JJN09_24215 CDS
T09971
Name
(GenBank) RHS domain-containing protein
Organism
pshs
Pseudomonas sp. HS6
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHS_repeat
DUF6531
RHS
Endonuclea_NS_2
DUF4595
TEN_YD-shell
OCRE
Motif
Other DBs
NCBI-ProteinID:
UQS14289
LinkDB
All DBs
Position
complement(5346979..5351835)
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AA seq
1618 aa
AA seq
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MNTPIGTLVLRVLDAKTPDVSLILKDFKNCLSDYKDWADGFWTGWALDVDQTFKVGNEVS
VTKRKTKTGAVETYATCPLVGDFTLIHMFESARFVPIGNTPVKLEPVTKGTFYDDVTGPV
IETMIGPSGIKVVEGCKKGQTYRITFFPNVSQNDVKALYDSYQGVIGKLDGWLQSEWSSK
FQPQWASYSAADRAGRSVILLKRALDGFEKALLRLWDDIKSLFELLANPQKNYAKLKNYL
SDIEIDKLYAASKESIASGLLILSDEPLMFIYVSAIVAWVGMLPPQVIVDVMTAIASEFL
INVLVGICLTGGAGLAVRAGTKVLSTVKSGEAVKYLEDLASTLMTLSNKHALPAHAEVSK
PIIASAKNVPMKPAKTAALKIDEAATEAPKPKPQPPQAAPKSQIAEQPAKGPLPKTSDTP
KQEVKDASSFPRDKKQKQTSLEPKEKIDDAPDQSKTPDDKSATCAKKTCTNGCPVSMVTG
EELLTLTDGELGGLLPFTWTRLYRTSAAEMDCGLGFGWSHALAQRVDINGDEVVWTDHEN
RVTTFPMPTEKRPAITNSLSEAAIFIGNDPSELVLTQAGERKQFYHFRFNSKGATLIAIS
DNYDNRLHITRDIHGRIKRVDNGAGRALLVRYDRKHIVAIDYQQFLPADNLEDAWSTVQT
LVTYTYDAQQRLIKATNAAGESERYAYNEQNVILERQLAGGASFYWEWEKEGKSARCIHH
WASFSQMDAHYAWDDKGSVTVTNADGSEEVYTHDDKARLVAKVDPDGAEHLKAYDDQGRL
IAEKDPLGAVTEYQYNEAGRLVAVIPPEDMPTSYEYYHGYVRVINRGPAKWIYWRNDQGD
ITEQIDPDGNSTHYSYDRQGRLLEIRHPDGSRHQLGWNNLGQLLEERLPDGGQRKYRYDA
LGRQITRQAETGAITHYQWDAANRLAQITLPGGATRAFTYNPYGRVTAERDELGRVTRYE
YADNLHLVSRRINPDGSQLRYRYDNARLLLTDIENERGEHYQLDYYSNGLIQQETGFDGR
RTAYEYDLNGKLLKKAEFGDDGSELVTEYQRDAAGRLLVKTLPDSEEIHYSYDALGRLVN
VDDGHWPLAYEYDVQDRLITEHQGWGTTRYEYDSVGQLNHCRLPDGSTLDYRHQPGGHLS
SIDLNGTRLTSHQFSAGREQQRQQGLLLSQYQYDEQGRLQAHSVSQRDKNLFQRRYNYDA
NGNLAGIDDSRKGNRSYHYDPLDRLINVRGTTPESFAHDPAGNLLGQTDMPVANLANVKG
NRLLMQGDRHYDYDAYGNLIRERRGANQKLVTEYRYDCQHRLIGVSLPGGSTASYKYDAF
GRRIEKTVDSHTTEFLWQGERLIAESADNRYRTYIYEPGSFRPLAMLDGEGPRKATPFYY
QLDHLGTPQELTDYSGEIMWSAKYRAYGNLAALDVSEIDNPLRFQGQYFDAETGLHYNRH
RYYNPNTARFLTPDPIKLAGGLNNYQYVPNPTGWVDPLGLACGPENCPNVTKDAHGRITD
WEFDVTPDDIGTGSPTNQAARDHARSLGNATDDAGHARGSKLGGPGTVLDNIFPQAPSIN
RGQFRVFEKGVAEHIIENDVSASAKLTAVYEGQETRPYKLIYKIVFSDGTKLTKEFDN
NT seq
4857 nt
NT seq
+upstream
nt +downstream
nt
atgaataccccgattggtacattggtcctgcgtgtgctggacgccaaaacacctgacgtg
agcctgattctcaaagacttcaaaaactgcctgagtgattacaaggattgggctgacggt
ttctggacaggctgggcgctggatgtcgaccagaccttcaaggtcggcaatgaagtcagc
gtcacgaaacgcaagaccaaaaccggtgccgtggaaacctatgcgacctgcccactggta
ggtgatttcacgctgatccatatgtttgaatcagcccgattcgtccctatcggcaatact
ccagtgaaactggagccagtgaccaaaggaaccttttacgacgacgttacgggaccggtc
atcgaaaccatgatcggcccaagcggcatcaaggtagttgaaggctgcaagaagggtcag
acctaccgcatcacgttctttccgaatgtctcgcagaacgacgtcaaagcgctctatgac
tcctatcaaggcgttatcggcaagcttgacggctggctgcaaagcgaatggtcgagcaag
tttcagccgcaatgggcgagctactcggcggcagatcgagccgggcgttcggttattttg
cttaaacgggcactggatggttttgagaaagctctgcttcgtctgtgggatgacatcaaa
agcctgttcgagctgctcgctaatccgcaaaaaaactacgcgaaactcaaaaattatctg
tcggacatcgaaatcgacaagctatatgccgcgtcgaaagagtccattgcttcagggttg
ctgattctcagtgacgagccgctgatgttcatctatgtctcggcgattgtggcgtgggtc
ggcatgcttccgccgcaggtcatcgtcgacgttatgacggcgattgcttcggagtttctg
atcaacgtactggtgggcatctgtttgacaggtggtgccggactggctgtaagagcaggg
acaaaagtcctgtccaccgtcaaatcgggagaagcagtcaaatacctggaagatcttgcc
tccactctgatgacgctcagcaacaaacacgccctgcccgctcacgcggaagtgtcgaag
ccaatcatcgccagcgctaaaaatgtgccgatgaagcccgcaaaaaccgcagctttgaag
atcgatgaggccgccactgaggcgcccaagcctaaacctcagccaccgcaggccgcaccg
aaaagccagatagcggagcaaccagccaaaggcccgctgccgaaaacttcagatacaccg
aaacaggaggtcaaggacgcctcctcatttccacgggacaaaaagcagaaacaaacctcg
cttgagccaaaggaaaagatcgacgacgctcctgatcaatcgaagacacctgacgacaaa
agcgccacctgtgccaagaaaacctgcaccaatggctgtccggtttcgatggtcaccggc
gaagaattgctgacacttaccgacggcgaactcggcggcttgctgcccttcacctggacg
cgcctctatcgcaccagtgcggcagaaatggattgcggtctcggttttggctggagccat
gccctcgcccaacgggtggacatcaatggcgatgaagtcgtctggaccgaccacgaaaac
cgtgtaacgacttttcctatgccgaccgagaagcgtccggcaatcaccaacagcctttcg
gaagccgcgatcttcatcggcaatgatccttccgaactggtgctcacgcaggctggtgaa
cgcaagcagttctatcacttccgcttcaacagcaaaggcgcgacgctgatcgccatcagc
gacaactacgacaatcgcctgcacataacccgtgacatccacggtcgaatcaagcgcgtg
gataacggggccggtcgagcgcttctggttcggtacgaccgcaaacacatcgtcgccatc
gactatcagcaattcctcccggcagacaatctggaagatgcatggagcaccgtccagacg
ctggtcacttacacgtacgatgctcaacaacgcctgatcaaagccacgaacgctgccggc
gagtcggagcgttacgcctacaacgaacagaacgtcattctcgagcggcaactcgccggt
ggcgccagcttctactgggaatgggaaaaggaaggaaagtcagcgcgctgcatccatcac
tgggccagcttctcgcaaatggacgcgcactacgcgtgggatgacaaaggtagcgtcacg
gttaccaacgccgatggtagcgaagaggtctacacccacgatgacaaggctcgactcgtc
gccaaggtcgatccggatggtgcggaacaccttaaggcttacgacgatcaaggccggttg
atcgccgaaaaggatccgctgggggcggtcactgaataccaatacaacgaggccggtcga
ctggtcgcggtcatcccgccggaagacatgccgacctcctacgagtactaccacggctac
gtccgtgtgattaaccgtggtccggccaaatggatttactggcgcaacgaccagggcgat
atcaccgaacaaattgatcctgatggaaactcgacgcactacagttacgatcgccaggga
cgcttgctggaaatcagacaccctgatggcagccgtcatcaactgggctggaataacctc
ggccagttgctggaggagcgactgcccgacggcggtcaacgcaaatatcgctacgacgcg
ctcggtcggcagatcacacgtcaggctgaaaccggtgcaatcacccactaccagtgggat
gctgcaaaccgtctggcacagatcaccctgcccggtggtgccacccgcgcgtttacctac
aacccgtacggtcgcgtcacggctgaacgcgacgaactgggccgcgtaacccgttacgag
tatgccgataacctgcacctggtcagccgtcgtatcaacccggacggcagtcaactgcgt
tatcgctatgacaacgcacgcctgctgctcaccgacatcgaaaacgaacgcggcgaacac
tatcagctggattactactcgaacgggctgatccagcaggaaaccggtttcgacggacgc
cgcactgcctacgagtacgacctcaacggcaagctgctgaagaaagccgaattcggcgac
gacggcagcgaactggtcaccgaataccagcgcgacgccgctggccgactgctggtgaag
accctccccgacagcgaggaaattcactacagctacgacgcacttggccgtctggtcaac
gtggacgatggtcattggccgcttgcttatgaatacgatgtgcaggatcggctgatcacc
gagcatcagggctggggcacaacgcgttacgaatacgacagcgtcggacagctcaatcac
tgccgcctgccggatggcagcacactcgattatcgccaccaacccggcgggcacctgagc
agcatcgacctcaacggcacacgcctgacttcccaccagttcagcgccggtcgtgaacag
caacgtcagcaaggtctgctgctcagccaataccaatacgatgaacaaggccgcctgcaa
gcgcacagcgtcagtcaacgcgacaaaaacctgttccagcgtcgctacaactacgacgcc
aacggtaacctcgccggcatcgacgacagccgtaaaggcaatcgtagctaccactacgac
ccgctggatcgactgatcaacgtacgtggcacaacacccgaaagctttgcccatgacccg
gcgggtaacctgctcggtcagaccgacatgcccgtagccaacctggccaacgtcaaaggc
aaccgcctgctgatgcaaggcgaccgccactacgactacgacgcttacggcaacctgatc
cgcgagcggcgcggcgctaaccagaaactcgtcactgaataccggtatgactgccaacat
cgtctgatcggcgtaagccttccgggaggcagtacggcgtcgtacaaatacgatgccttc
ggccgccgtatcgaaaaaaccgtcgacagccataccaccgaattcctgtggcaaggcgaa
cgtctgatcgccgaaagcgccgacaaccgctatcgcacttacatctacgaacccggcagc
ttccgcccgctggcgatgctcgacggcgaggggccacgaaaggccacgccgttctactat
caactcgaccacctcggcacaccacaggaactcaccgactacagcggcgagatcatgtgg
tcggcgaaataccgtgcctatggcaaccttgcggcactggatgtcagcgaaatcgacaat
ccgttgcgattccagggtcagtacttcgacgccgagacggggttacattacaaccggcac
cgctactacaatccgaacaccgcgcgcttcctgacaccggatccgatcaagcttgcgggt
gggttgaataactaccagtacgtaccgaaccctacggggtgggtagatccattgggcctg
gcctgtggccccgagaactgcccaaatgtcacaaaggatgcacacggccgaataactgat
tgggagtttgatgtcacacccgatgatatcggaactggtagccccactaatcaggcagct
agggatcatgcaagatcgctcggtaatgctaccgacgatgctggacacgctagaggaagc
aaactgggcggcccaggtaccgtactggataatattttcccacaagcaccctctatcaat
cgtggacaattcagggttttcgagaaaggggtcgcagagcacatcatcgaaaatgacgtg
agcgcaagcgccaaactaactgcggtatacgaagggcaagaaacccgaccatacaagctt
atttacaaaatcgtgttctcagatggcacaaaactcaccaaagaatttgacaactaa
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integrated database retrieval system
