Pseudomonas sp. HS6: JJN09_25560
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Entry
JJN09_25560 CDS
T09971
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pshs
Pseudomonas sp. HS6
Pathway
pshs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pshs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JJN09_25560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pshs03019
]
JJN09_25560
03400 DNA repair and recombination proteins [BR:
pshs03400
]
JJN09_25560
Enzymes [BR:
pshs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JJN09_25560
Messenger RNA biogenesis [BR:
pshs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JJN09_25560
DNA repair and recombination proteins [BR:
pshs03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
JJN09_25560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
UQS14541
LinkDB
All DBs
Position
complement(5631257..5633185)
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AA seq
642 aa
AA seq
DB search
MHNTLEQVFGYPQFRPGQEAAISAVLAGRSAAAIFPTGSGKSLCYQLPALLLPHLTLVVS
PLLALMQDQLEFLRRHGISAGSIDSAQSRDVANDVMARARSGELKILMISVERLKNERFR
NFLQQVPISLLVVDEAHCISEWGHNFRPDYLKLPDYQRQFKIPQTLLLTATATPKVIADM
QAKFAIAAEDVVTTGFYRPNLNLLVEPVRGQDKRRRLVEWMAERADQPSIVYVTLQKTAE
HIAEHLGRNGIQAEAYHAGLPHEQRDAIQKRFMGGQSNCIVATIAFGMGIDKSDIRNVVH
FDLPKSIENYSQEIGRAGRDGQPSDCLVLANRDSLNVLENFVYGDTPERDGIRHVLDELQ
AAGPEGQWEFLLGPLADQSNIRALPLKTLLVQLELRGLIAPRYAYYAEYRFKYLLEPEAL
LERFEGERRDFVAAIIQTSSRARTWATVNFEAMYTQYSAERNRVVKALDYFQEKGWVELE
SKQMTEVYNVLHSAFDSQVLSGELHEYFSRHEQTEVARIHAMLELFATERCLGYRLAEYF
GDHNAPEQCGHCSVCHGQVARLPAPPELPALVDKSFSALCGDFIHRHEQQTGSAPSAERL
TRFLCGISVPLFTKLKARTISGYASLEMYPYADVRAWAQAHL
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atgcacaacaccctggaacaggtttttggttatccacaatttcgacccggtcaggaagcg
gcaatcagtgccgttttggccgggcgttcggcggcggcgatctttcccaccggatctgga
aaatctctttgttaccagctgccggcactcctgttgccgcacctgacgctggtggtctcg
ccgttgctggcgctgatgcaggatcagctcgagtttttgcggcgacatggcatttcggca
ggcagcatcgattcggcacagagccgtgacgtcgccaatgatgtgatggctcgcgcccgt
tccggcgagttgaagatcctgatgatttccgtggagcggttgaagaacgagcgctttcgc
aactttttgcagcaggtgccgatctcgctgctggtggtggatgaggcgcactgtatctcc
gagtggggccataacttccggcctgattacctcaaactgccggactaccagcgccagttc
aagatcccgcaaactttgctgctgaccgccacggcaacaccgaaagtcatcgccgacatg
caggcgaaattcgccatcgctgccgaggatgtggtgaccaccggtttctaccggcccaac
ctcaatctgttggtggaaccggtgcgcggtcaagacaagcgtcgacggttggtagagtgg
atggccgagcgtgcggatcagccgagcatcgtctacgtcaccttgcagaaaaccgccgag
cacatcgctgaacatctggggcgcaatggcattcaggccgaggcttaccacgccggattg
cctcacgaacagcgggacgcgatccagaaacgcttcatgggcgggcagtccaattgcatc
gtcgcgaccatcgccttcgggatgggcatcgacaagagcgacatccgcaatgtggtgcat
ttcgatctgcccaaatccatcgaaaactacagccaggaaatcggccgcgccgggcgtgac
gggcaaccgtccgactgcctggtgctggccaatcgcgacagcctcaatgtgctggaaaac
ttcgtctacggcgacacgccggagcgcgatggcattcgccatgtgctggatgaattgcag
gccgcaggtcctgaaggtcagtgggagtttttgctcgggccgttggcggatcagagcaac
atccgtgcgctgccattgaagacgttgctggtgcaactggagctgcgagggctgattgcc
ccgcgctacgcgtactacgccgaataccgtttcaagtacctgctggaacccgaggcgttg
cttgagcgtttcgagggcgagcgcagggatttcgtcgcggccatcatccagacctcaagc
cgcgcacggacctgggccacagtgaatttcgaggcgatgtacacgcaatattcggctgag
cgcaatcgtgtggtgaaggcgctggattacttccaggagaagggctgggtcgagctggaa
agcaaacagatgaccgaggtctacaacgtgctgcacagcgccttcgacagccaggtcttg
agtggcgagctgcatgaatacttctcccgccacgaacagaccgaagtggcgcggattcac
gccatgctcgaattgttcgccaccgaacgctgcctgggctatcgactggcggagtacttc
ggcgatcacaacgcccccgagcagtgcgggcattgctcggtgtgtcatgggcaggttgcc
aggctcccggcacctccggaattgccggcacttgtggataaaagtttctcggcgttgtgc
ggcgattttatccacaggcacgagcaacagacgggcagtgcgccttcagcggagcggctg
acgcggtttctgtgcgggatcagtgtgccgctgtttaccaagctcaaggcgcggaccatt
tccgggtatgcatcgctggagatgtatccctacgcggacgtgcgggcctgggctcaggcg
catctttga
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