Pseudomonas sp. HS6: JJN09_26170
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Entry
JJN09_26170 CDS
T09971
Symbol
algB
Name
(GenBank) sigma-54-dependent response regulator transcription factor AlgB
KO
K11384
two-component system, NtrC family, response regulator AlgB
Organism
pshs
Pseudomonas sp. HS6
Pathway
pshs02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pshs00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
JJN09_26170 (algB)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02022 Two-component system [BR:
pshs02022
]
JJN09_26170 (algB)
Two-component system [BR:
pshs02022
]
NtrC family
KinB-AlgB (alginate production)
JJN09_26170 (algB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Response_reg
Sigma54_activ_2
HTH_8
AAA_5
AAA
Mg_chelatase
VpsR
AAA_22
cREC_REC
AAA_2
AAA_19
nSTAND3
HTH_23
Xre-like-HTH
AAA_16
MCM
HTH_29
HTH_50
IstB_IS21
HTH_17
DUF815
Motif
Other DBs
NCBI-ProteinID:
UQS14658
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Position
5763891..5765237
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AA seq
448 aa
AA seq
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MESATEHQGRILLVDDESAILRTFRYCLEDEGYTVATANSAAQADALLQRQVFDLCFLDL
RLGEDNGLDVLAQMRIQAPWMRVVIVTAHSAVDTAVDAIQAGAADYLVKPCSPDQLRLAT
AKQLEVRQLSARLEALEGEIRKPKDGLDSHSPAMKVVLETARQVASTDANILILGESGTG
KGELARAIHGWSKREKKSCVTINCPSLTAELMESELFGHSRGAFTGASESTLGRVNQADG
GTLFLDEIGDFPLTLQPKLLRFIQDKEYERVGDPVTRRADVRILAATNLNLEDMVRDGRF
REDLLYRLNVITLHLPPLRERAEDILTLADRFLARFVKEYARPARGFSDEAREALLGYRW
PGNIRELRNVVERASIICPQERVEINHLGMAEQPANNAPRVGAALSLDELEKAHIGAVLA
TAGTLDQAAKTLGIDASTLYRKRKQYNL
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atggaatcagccactgagcaccaaggccgcattctgctggtggacgatgaatccgccatc
ctgcgaaccttccgttattgcctcgaagacgaaggctataccgtcgcgaccgccaacagc
gcggcccaggccgatgcgctgctgcagcgtcaggtgttcgatctgtgcttccttgatttg
cgtctgggcgaagataacggtctcgatgtactggcgcagatgcgcattcaggcgccgtgg
atgcgggtggtgatcgtcaccgctcattccgccgtcgacacggcggtggacgcgattcag
gcgggcgctgccgattatctggtcaaaccgtgcagccctgaccagttgcgcctggccacc
gccaagcaactggaagtccgccagctctcggcccgtctggaagccctcgaaggcgagatc
cgcaaacccaaggacggtctcgattcccacagcccggcgatgaaagtcgtactggaaacg
gcgcggcaagtggcaagcaccgacgccaatatcctgatcctcggcgaatccggcacgggt
aaaggtgaactggcccgtgcgattcacggctggagcaagcgcgagaagaaatcctgcgtc
accatcaattgtccgtcgctgaccgccgaactgatggaaagcgagctgttcggacacagt
cgcggcgcgttcaccggtgccagtgaaagcacgctgggccgggttaaccaagccgatggc
ggcacactgtttctcgacgagatcggcgattttccgctgacgttgcagccaaagttgctg
cgatttatccaggacaaggaatacgaacgggtaggggatccggtcacccggcgcgccgat
gtgcgcatccttgcagccaccaacctcaatcttgaagacatggtgcgcgacggacgtttc
cgcgaagaccttctctatcgcctgaacgtcatcactctgcatctgccgccgctgcgcgaa
cgcgctgaagacattctgactctggccgaccgtttccttgctcgcttcgtgaaggaatac
gcgcggccggcccgtggtttcagcgacgaagcacgggaagcgctgctgggttatcgctgg
cccggcaacatccgcgagttgcgcaacgtggtcgagcgggcgagcatcatttgcccgcag
gaacgcgtggaaatcaatcacctcggcatggcagaacaaccggccaataatgccccgcga
gttggcgcggccctgagcctcgacgaattggagaaggctcacatcggcgcggtgctggcc
accgctggcaccctcgaccaggccgccaaaaccctggggatcgacgcctcgaccctgtat
cgcaagcgcaagcagtacaacttgtga
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