KEGG   Pseudomonas sp. HS6: JJN09_26220
Entry
JJN09_26220       CDS       T09971                                 
Symbol
polA
Name
(GenBank) DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
pshs  Pseudomonas sp. HS6
Pathway
pshs03030  DNA replication
pshs03410  Base excision repair
pshs03420  Nucleotide excision repair
pshs03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:pshs00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    JJN09_26220 (polA)
   03410 Base excision repair
    JJN09_26220 (polA)
   03420 Nucleotide excision repair
    JJN09_26220 (polA)
   03440 Homologous recombination
    JJN09_26220 (polA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pshs03032]
    JJN09_26220 (polA)
   03400 DNA repair and recombination proteins [BR:pshs03400]
    JJN09_26220 (polA)
Enzymes [BR:pshs01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     JJN09_26220 (polA)
DNA replication proteins [BR:pshs03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     JJN09_26220 (polA)
DNA repair and recombination proteins [BR:pshs03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     JJN09_26220 (polA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     JJN09_26220 (polA)
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N DNA_pol_A_exo1 5_3_exonuc DNA_polI_exo1
Other DBs
NCBI-ProteinID: UQS14668
LinkDB
Position
complement(5775662..5778466)
AA seq 934 aa
MSQAPLVLVDGSSYLYRAFHALPPLTTSKGLPTGAVKGVLNMLKSLRKQYPDSPFAVVFD
AKGGTFRDEMYAEYKANRPSMPDDMRVQIEPLHQSVKALGFPLLCVEGVEADDVIGTLAR
SSAAANRPVIISTGDKDMAQLVDGHITLVNTMSGSSMDVEGVKEKFGVAPEQIIDYLALM
GDSSDNIPGVPGIGPKTASGLLVGVNGGLTELYAQLDIVPTLPIRGAKTLPAKLEEHKEM
AFLSYQLATIKVDVPLDIELDDLKMGAEDPAKLYELYTLLEFKSWINDLDRDAKRLELSS
VAAPEPAGDLFSAPAEETPAAPTEAAYETILDQARFDVWLEKLKNAKLFAFDTETTGVDA
QQAQLVGLSFAVQANEAAYIPLTHSYIGVPEQLDRDTVLRALKPILEDPSKLKVGQHAKF
DMNILANCAIGGDQNEGITVNGIAFDTMLESYVLNSTAIRHDMDSLAQKYLDHTTVSFQD
IAGKGAKQLTFDQIALEQAGPYAAEDADVTLRLHQTLFEKLSAIPSLASVLTDIEIPLVP
VLARIERQGAFVDAALLGIQSIELGDKMVALEREAFEIAGEEFNLGSPKQLGVILYEKLG
LPVLKKTAKGQPSTAEEVLAKLAEDDHRLPKVLMEHRSMSKLKSTYTDRLPEQINPRTGR
IHTSYHQAVASTGRLSSSDPNLQNIPVRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIM
AHLSRDEGLMNAFRNNLDVHTATAAEVFKVELNEVSSDQRRGAKAINFGLIYGMGAQKLG
KDIGVDTKTAKAYIDTYFARYPGVREYMDRTRAQAADQGFVETIFGRRLYLPDINSNKPQ
ERAAAERTAINAPMQGTAADIIKKAMVAVDNWLSASGLDAKVILQVHDELVLEVREDLVD
QVRDEIRVHMSEAAKLDVPLLVEVGVGNNWDEAH
NT seq 2805 nt   +upstreamnt  +downstreamnt
atgagccaagcccccctcgtcctggtggacggttcgtcttacctgtaccgcgcctttcac
gcgctgccaccgctgaccacgtccaaaggcctgccgaccggtgcggtcaaaggcgtgctg
aacatgctcaagagcctgcgcaaacaatatccggacagcccgttcgccgtggtgttcgac
gccaagggcgggacatttcgcgatgagatgtacgccgaatacaaggccaaccgcccgagc
atgcccgacgacatgcgcgtgcagatcgaaccgctgcaccagagcgtgaaggccctcggt
ttcccgctgctgtgcgtcgaaggcgtcgaggccgatgacgtgatcggcaccttggcccgc
agcagcgcggccgccaatcgtccggtgatcatctccaccggtgacaaggacatggcgcaa
ctggtcgacgggcacattaccttggtcaacaccatgtccggaagttcgatggacgtggag
ggcgtgaaggagaaattcggcgtcgctcccgagcagatcatcgattatctggccctgatg
ggcgactcttccgacaacatccccggcgttcccggcatcgggccgaaaaccgcgtccggc
ctcctggtgggcgtcaacggcggcctgaccgagctctacgcgcagctcgatatcgtgccg
accctgccgatccgcggcgccaagaccctgccggcgaagctcgaagagcataaggagatg
gcgttcctctcctatcaactggcgaccatcaaggtcgacgtgccgctggatatcgagctc
gacgacctgaaaatgggcgcagaagacccggccaaactttacgagctatacaccctgctg
gagttcaagagctggatcaacgatctggaccgcgacgccaaacgcctggaactgagcagc
gtcgccgcgcctgagccggccggcgatctattcagcgcgcctgcggaagaaacgcccgcc
gcaccgactgaggccgcgtacgaaaccatcctcgatcaggcacgctttgacgtctggctg
gaaaaactgaagaacgccaagctgtttgccttcgacaccgaaaccaccggcgtcgacgcc
caacaggcgcaactagtcggtctgtccttcgcggtgcaggcgaacgaagcggcctatatt
ccgctgacccactcctacatcggcgtgccggagcaactggatcgcgacactgtgttgcgc
gcgctcaagccgatcctggaagacccaagcaagctcaaggtcggccagcacgccaagttc
gacatgaacatcctggccaactgcgccatcggcggcgaccagaacgaaggcatcaccgta
aacggcattgccttcgacacgatgcttgagtcctacgtgctcaactccaccgccatccgt
cacgacatggacagcctggcgcagaagtacctggaccacaccaccgtgagcttccaggac
atcgccggcaaaggcgccaagcagctgaccttcgaccagatcgctctggaacaggccggg
ccctatgccgccgaagatgctgacgtgaccctgcgtttgcatcagacgctgttcgaaaaa
ctcagcgccatcccgagcctggccagcgtgctgaccgacatcgagatcccgctggtgccg
gtactggcacgcatcgagcgccagggtgccttcgttgatgccgcgctgctcggcattcag
agcatcgagctgggcgacaagatggtcgcgctggagcgtgaagcgttcgagatcgccggt
gaagaattcaacctgggttcgccgaagcaactgggcgtgatcctctacgaaaaactcggc
ctgccggtgctgaagaaaaccgccaagggccagccgtccaccgccgaagaagtgctggcg
aaactggccgaagacgatcaccgcttgccaaaagtgctgatggaacaccgttccatgagc
aagctgaaaagcacctacaccgatcgcctgccggaacagatcaatccgcgcaccgggcgt
attcacacttcgtatcatcaggctgtcgcgtcgaccggtcgcttgtcctcgagcgatccg
aacctgcagaacattccggtgcgcaccgctgaaggccgacgcatccgtcaggcctttgtt
gcgccgaaaggttacaaactgctggcggcggactactcgcagatcgaattgcggatcatg
gcgcacctgtcccgcgacgaaggcctgatgaacgccttccgcaataacctggacgtgcac
accgcaacggccgccgaagtattcaaggtcgagctgaacgaagtgtcctccgaccagcgc
cgtggcgccaaggcgatcaacttcggtctgatctacggcatgggcgcgcagaagctgggc
aaagacatcggcgtcgacaccaagaccgccaaggcttacatcgacacctacttcgcgcgc
tacccgggcgttcgtgaatacatggatcgcacccgcgcgcaggcggcagaccaaggtttc
gtggaaacgatcttcggccgtcgtctgtatctgccggacatcaactccaacaagccgcag
gaacgcgctgccgctgaacgcacggcgatcaacgcgccgatgcagggcactgcagcagac
atcatcaagaaagccatggtggcggtggataactggctgagcgcttcggggctggacgcc
aaagtcatcctgcaggtgcacgacgaactggtgctggaggttcgtgaggatctggtcgat
caggttcgcgacgaaattcgcgtgcacatgagcgaagcggcgaaactggacgtgccgctg
ctggtggaagtcggggttggcaacaattgggacgaggctcactga

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