Pseudomonas sp. HS6: JJN09_26690
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Entry
JJN09_26690 CDS
T09971
Name
(GenBank) AAA family ATPase
KO
K03546
DNA repair protein SbcC/Rad50
Organism
pshs
Pseudomonas sp. HS6
Brite
KEGG Orthology (KO) [BR:
pshs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pshs03400
]
JJN09_26690
DNA repair and recombination proteins [BR:
pshs03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
JJN09_26690
Archaeal homologous recombinant proteins
JJN09_26690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
SMC_N
AAA_29
AAA_21
ABC_tran
MMR_HSR1
nSTAND3
RsgA_GTPase
Prp3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UQS14760
LinkDB
All DBs
Position
complement(5867320..5870961)
Genome browser
AA seq
1213 aa
AA seq
DB search
MKILAIRLKNLASLAGPFEIDFTAEPLASAGLFAITGPTGAGKSTLLDALCLALFGSVPR
LNNTSRDAKVPDADGEIATGDPRTLLRRGTGEGFAEVDFVGVDGRRYRARWEANRAREKA
GGKLQASRQSLRDIDQDQLLASQKGEYKVQLEAALGLNFEQFTRAVLLAQSEFSAFLKAD
DNDRSELLEKLTDTALYTRLGRRAFDKTKEAREAHKQLQDQATGMTPLPPEARAELDERF
NTAQRQLKLQQAQLKQLEQQHTWLKDLHLLQDAQQAAAEQLQGAEHERETLAGERLRLTR
LEQLAPQRHQFARKAEIDSLLTPLAAQISAHNRQQGEMTERQTQLERDLTNAQVALTQAQ
TQQSESAPLLRQAFDEQSTLAHLAREVASGAEAKQNAEQACTQGQSAIQTLLDQQKMVAE
RLQRIAADLQQSAHLAPLSEAWNAYRDRLQQLMLIGNRLNKGESELANLERNAARATEEL
ATQKQQLEVLFKEAGAEPNAVAEQIGILGTLLQDNRKQLRAIEELTRLWAGQQDLDKRGA
ELQLRQLDAQQERERLTQDGVKTKSELTVAEQTLNVTRELLERQRLARSASVEELRAQLQ
DDQPCPVCGSNEHPYHQPEALLQSLGRHDESEQANAQQAVDQLKEKITELRTSVGGVIAQ
QKELLQQQEQLAAQQQALTPSIEAHPLAAPLLNQASDKRADWLTRQNDQLNQSITQDEQR
QTALLTLQQDAARLTQQLRHAETAHQQAAQHLSNQQRELSADRQRLDEELAAFATLLPSE
THEALRAEPAATFMQLDQQIAERLAQIDQQKEELTEQQQRQQTLEKEQDRQQNRVQQLQN
AEQQFNALTSQQQASQEKLAQLLGDHNCAEHWQQQLELAVEQARIAESTTTQALQGVRTQ
LVQIAAELKAQQERLQALETEDRDLAGKIADWRARHPELDDGGLKDLLRVDDAQVGELRE
RLQRNEKALEHAKVLLQERDRQLLEHQAQHNGNLEAEQLTTALADVQNQCSASEQLCAEL
RAEQVEDQRRQNANCALAQQIADAYAEYQRWARLNALIGSATGDTFRKIAQAYNLDLLVH
HANVQLRQLVKRYRLKRGGSMLGLLVMDTEMGDELRSVHSLSGGETFLVSLALALGLASM
ASSTLKIESLFIDEGFGSLDPESLQLAMDALDGLQAQGRKVAVISHVQEMHERIPVQIQV
QRQGNGLSTLEVK
NT seq
3642 nt
NT seq
+upstream
nt +downstream
nt
atgaagattctcgccattcgtttgaagaaccttgcttcgctggccggcccgttcgagatc
gacttcaccgccgaaccgctggccagcgccggtctgttcgccatcaccggcccgaccggc
gcgggcaaaagtaccttgctcgatgccctgtgcctggcgttgtttggctctgtgccgcgt
ttgaacaacaccagccgtgacgccaaggtgccggacgccgacggcgaaatcgccaccggc
gacccgcgcaccctgctgcggcgcggcacgggtgaaggttttgccgaagtggattttgtc
ggtgtcgatggacgccgctatcgcgcacgctgggaagccaaccgcgcccgggaaaaggcc
ggcggcaagttgcaggccagccgtcagagcctgcgcgacatcgatcaggatcaactgctc
gccagccagaaaggcgagtacaaggttcagctcgaagcagcgctgggcctgaacttcgaa
cagttcacccgcgccgtgctgctggcccagagtgagttcagtgccttcctcaaggcggat
gacaacgaccgcagcgaactgctggaaaaactcaccgacaccgcgctctacacccgcctc
ggccggcgcgcgttcgacaagaccaaagaggcgcgcgaagcccacaagcagttgcaggat
caggccaccggcatgaccccgctgccgcccgaggctcgcgccgaactcgacgaacgcttc
aacactgcccagcgacaactgaaattgcagcaggcccagctcaaacagcttgaacaacaa
cacacctggctcaaggatctgcacctgttgcaggacgcgcagcaggcagccgccgaacaa
ctgcagggcgccgaacacgaacgcgaaacgctggccggcgaacgcttgcgactgacgcgc
cttgaacaacttgccccgcaacggcaccagttcgcccgcaaggctgaaatcgattcgctg
ctgacaccgttggcagcgcagatcagtgcgcacaatcgacaacaaggcgagatgactgaa
cgccagacacaactggagcgggatctcaccaacgcgcaagtcgccctgacccaggcacag
acgcaacagagcgaaagtgcgccgctgttgcgtcaggctttcgacgagcaaagcaccctc
gcccacctcgccagggaggtcgcctccggtgccgaagccaagcaaaacgccgaacaggcc
tgcacccagggccagagcgcgatccagaccctgctcgaccaacagaaaatggtcgccgaa
cgcttgcaacgcatcgccgccgatcttcagcaaagtgctcatctggcaccgttgagcgaa
gcctggaatgcctaccgcgatcgcttgcagcaattgatgctgatcggcaaccggttgaac
aagggcgaaagcgaactggcgaatctcgaacggaacgctgcccgcgccaccgaagaactg
gccacgcaaaagcagcagctggaagtgctgttcaaagaggctggcgccgagccgaatgca
gtcgccgaacagatcggcatcctcggcactctgttgcaggacaatcgcaagcaactgcgc
gcgatcgaagagctgacacgcctttgggccggccagcaggacctggacaaacgtggtgcc
gagctgcaactgcgtcagctcgatgcgcaacaggagcgcgagcgcctgacccaggacggg
gtgaaaaccaagtccgaactgaccgtcgccgaacagaccctcaacgtcacccgtgagttg
ctcgaacgccagcgtctggcccgcagtgccagcgtcgaagagctgcgtgcgcagttacag
gacgaccagccgtgcccggtctgcggcagcaatgaacatccgtatcaccagccggaggcg
ctgctgcagagtctcggtcggcacgatgaaagcgagcaggcgaacgcgcaacaagcggtc
gatcaactgaaggaaaaaatcaccgagctgcgaaccagtgtcggtggcgtgattgcccag
cagaaagagttgctgcaacaacaggaacaactcgccgctcaacagcaagcgctgacgccg
agcattgaggctcatccgctggccgcgccgttgctgaatcaggccagcgacaaacgcgct
gactggctgactcgccagaacgatcaactgaaccagagcatcacgcaagacgaacagcgc
cagacggccttgctcacgctgcaacaggatgcggcgcgcctgacccagcaactgcgtcac
gccgaaaccgcgcaccagcaagcggcgcagcacctgagcaatcagcagcgcgagttgagc
gctgaccgccagcgtctcgacgaagagctcgcagccttcgccacactgctgccctccgag
actcacgaagctctccgcgccgagccggctgcgaccttcatgcagcttgaccagcagatc
gccgagcgtctggcgcaaatcgatcagcaaaaagaagaactgaccgaacagcaacaacgc
cagcagacgcttgagaaggaacaggatcgtcagcaaaaccgcgtgcagcaattgcaaaac
gctgaacagcagttcaatgcactgacctctcagcaacaggccagccaagagaaactcgcg
caattgctgggcgatcacaactgcgccgaacactggcaacagcagcttgaactggcggta
gaacaggcgcgcatcgccgaatccaccacaactcaggcactgcaaggcgtgcgcacgcaa
ctcgtgcaaatcgccgccgaactcaaagcgcagcaggagcgtttgcaggcgctggaaacc
gaagaccgcgatctggccggcaagattgccgactggcgcgcccgtcacccggaactggat
gacggtggcctcaaagatctgctgcgggtcgatgacgcgcaggttggcgagttgcgcgag
cgtttgcagcgcaacgaaaaagccctggaacacgccaaagtgctgttgcaggaacgtgat
cgccagttgctcgagcatcaggcgcagcacaacggcaaccttgaagccgaacaactcacc
actgccctcgccgacgtgcagaatcagtgcagcgcgagcgaacagctctgcgccgagctg
cgtgccgagcaagtcgaggatcagcgccggcagaatgccaattgcgcgctggcgcagcag
atcgccgacgcctatgccgagtatcagcgctgggcgcggctcaatgcgctgatcggctcg
gccactggcgataccttccgcaaaatcgcccaagcctacaacctcgacctgctggtgcat
cacgccaacgtgcaactgcggcaactggtcaagcgctaccgcctcaagcgtggcggcagc
atgctcggcctgttggtgatggacaccgaaatgggcgacgaactgcgctcggtgcattcg
ctgtccggcggcgaaacctttttggtgtcgctggctctcgcattgggcctggcctcgatg
gcgtcgagcacactgaaaatcgaatcgctgttcatcgacgaaggcttcggcagcctcgat
ccggaatccctgcaactggccatggacgccctcgacggcttgcaggcacagggccgcaag
gtcgcggtgatttcccacgtacaggaaatgcacgagcggattccggtgcagattcaggtg
cagcgtcagggcaatggtttgagcacactggaggtgaaatga
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integrated database retrieval system
