Pseudomonas sp. HS6: JJN09_28030
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Entry
JJN09_28030 CDS
T09971
Symbol
phrB
Name
(GenBank) deoxyribodipyrimidine photo-lyase
KO
K01669
deoxyribodipyrimidine photo-lyase [EC:
4.1.99.3
]
Organism
pshs
Pseudomonas sp. HS6
Brite
KEGG Orthology (KO) [BR:
pshs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pshs03400
]
JJN09_28030 (phrB)
Enzymes [BR:
pshs01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.3 deoxyribodipyrimidine photo-lyase
JJN09_28030 (phrB)
DNA repair and recombination proteins [BR:
pshs03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
JJN09_28030 (phrB)
Prokaryotic type
JJN09_28030 (phrB)
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Paralog
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GFIT
Motif
Pfam:
FAD_binding_7
DNA_photolyase
CAP59_mtransfer
Motif
Other DBs
NCBI-ProteinID:
UQS15013
LinkDB
All DBs
Position
complement(6207559..6209004)
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AA seq
481 aa
AA seq
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MQLIWLRSDLRQHDNTALTAAAERGPTVAVYLLSPEQWQEHDDAPCKIDFWLRNLLELSE
SLGKLNIPLLIRSAPRWDHAPAVLLELCRQLQVEAVHVNEEYGIHESRRDAAVERALQAE
GIAFHSYLDQLLFKPGSVLTKTGTYFQVFSQFRKVCYERLHGSMPPLINAPSAQAPLHID
SDPVPESIDGFPTPGQALRNLWPAGETEAQRRLDTFADVQIDYYKSERDFPAKPGTSQLS
AYLAAGVISPRQCLHAALQTNQGEFESGKVGAVTWINELLWREFYKHILVGYPRVSRHRA
FRPETEALAWRDAPQELAAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTKNLL
IDWREGERFFMRHLIDGDLAANNGGWQWSASTGTDAAPYFRIFNPVSQSEKFDSEGLFIK
HWLPELAGLNKKEVHNPASAGGLFGVADYPPPIVNLSTSRERALTAFKNLPSRQAAGGGY
E
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgcaattgatctggctgcgcagcgacttgcgccaacacgacaacaccgccctgacagcc
gccgccgagcgtggcccgaccgtggccgtgtacctgttgagccccgagcaatggcaggaa
catgacgacgccccgtgcaagatcgatttctggctacgcaacctgctggagttgagcgag
agcctcggcaaactgaacatcccgctgctgatccgcagcgccccgcgctgggatcacgcg
ccggcggtgctgcttgagctgtgccggcaattgcaggtcgaggccgttcacgtcaacgaa
gaatatggcatccacgaaagccgccgcgatgcagcggttgagcgggcattgcaagccgaa
ggcatcgcgtttcacagttacctcgatcagctgctgttcaaaccgggcagcgtgttgacc
aagaccggcacctactttcaggtgttcagccagttccgcaaagtctgctacgaacgcttg
catggctcgatgccgccgctgattaatgctccgtccgcgcaggccccgctgcacatcgac
agcgacccggtgcctgagtccatcgacggtttcccgacacccggccaagccctgcgcaac
ctgtggcccgctggtgaaaccgaggctcaacgacgcctcgacaccttcgccgacgtgcag
atcgactattacaaaagcgaacgcgacttcccggccaagccaggcaccagccaactctcg
gcctatctcgccgccggtgtgatttcgccgcgccaatgcctgcatgccgcgctgcaaacc
aatcagggcgaattcgaaagcggcaaggtcggcgccgtcacctggatcaacgaattgctg
tggcgcgagttctacaaacacattctggtcggttacccccgggtgtcccgccatcgcgcg
ttccgcccggaaaccgaagccctggcctggcgcgatgcgccgcaggaactggcggcctgg
caggaggcacgcaccggcctgccgatcatcgacgcggccatgcgccaattgctcgaaacc
ggctggatgcacaatcgcctgcggatggtggtggcgatgttcctgaccaagaacctgctg
atcgactggcgcgaaggcgagcgctttttcatgcgccacctgatcgacggagatctggcc
gcgaacaacggcggctggcagtggagcgcgtcgaccggcaccgatgcggcgccgtacttc
cggattttcaacccggtcagccagtcggagaaattcgacagcgaaggtctgttcatcaag
cactggctgcctgaactggccggcttgaacaagaaagaagtgcacaacccggcgagtgcc
ggcgggttgttcggcgtcgcggactatccgccaccgatcgtcaacctgagcacctcgcgg
gagcgggcgctgaccgcgttcaagaacctgccgtcacgtcaggcggccggaggcgggtat
gagtga
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