Planococcus shixiaomingii: QWY21_00290
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Entry
QWY21_00290 CDS
T10328
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pshx Planococcus shixiaomingii
Pathway
pshx03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pshx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
QWY21_00290 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pshx03400
]
QWY21_00290 (mfd)
Enzymes [BR:
pshx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
QWY21_00290 (mfd)
DNA repair and recombination proteins [BR:
pshx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
QWY21_00290 (mfd)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
UB2H
Cas3-like_C_2
RecG_dom3_C
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
WKA54873
LinkDB
All DBs
Position
61552..65085
Genome browser
AA seq
1177 aa
AA seq
DB search
MEHILQAFSEDSHTQRFIADLKKGQDHQLISGLSGSARSIFYQTVWSQLNEPLLIVTPNL
LNAQRVHDDLIKLMGEENVHLYPADELIAADVSFSGPELRAHRIDTLDHMKNVGKGVYVT
PVAGLRKLLPSKAQWDISTLQTADGEELDIEDWLKKLVAMGYSRTPMVTTPGEFALRGGI
LDVYPLNFEHPVRIELFDTEVDSIRLFSAEDQRSLAKLQSLRVLPASELVLSKLQQRKLA
DKLEDQLAHTLKKIKAEDTKEALLMHIQHDIDMLRQGNVPDGMAKYAALVEEQSAFLGDY
FPASGFVFFDELGRIQEMTETLEREEGDWIVSLLEEGKFLHDVHLAYTIREVLSKLKQKM
TFLSLFVRTFPMVSVKKSVVFSSKPMQSFHGQMHLLKAEVERWSLAKFRVFIVAQGEERL
KKVHSVLEDYDIEAEIVDSSAEVQGGKVYLVDGDLANGFEVPLQRFAVLTDSELFAKQAK
KKTRPQKLTNAERIKSYSEIKPGNYIVHVHHGIGRYVGIETLEIGGVHKDYLHIVYKADD
KLFVPVDQIDLIQKYVASEEKEPKLHKMGGAEWQKTRKKVSAAVQDIADDLIKLYAEREA
QKGFAFSEEQDMQRQFEAEFPYEETVDQLRSIGEVKRDMEKERPMDRLICGDVGYGKTEV
AIRAAFKAVLDGKQVAFLVPTTILAQQHFETMSERFKDYPIEVGLMSRFRSKKQQTETIK
GLKNGSVDVVIGTHRILSKDLVYKDLGLLIIDEEQRFGVTHKEKIKQMKTNVDVLTLTAT
PIPRTLHMSMIGVRDLSVIETPPENRFPVQSYVMEYNGTLVREAIEREMARGGQVFFLYN
RVDDMTRKVEEIQALVPEARVGYAHGQMSERELESVIISFLDGDYDVLVTTTIIETGIDI
PNVNTLIIHNADRMGLSQLYQLRGRVGRSSRVAYAYFMYQRDKVLTDVAEKRLMAIKEFT
ELGSGFKIAMRDLTIRGAGNLLGSQQHGFIDSVGFDLYSQMLKEAVEERQTGIKKEDIPE
IEISLDIDAYIPDSYVGDGYQKIQMYKRVKGIETAEEVEELQDELIDRFGDMPLETDRLL
RVARMKVWARTVGVESIKQNGKITSIRLSEKGTSIVNGGKLVEDSAKFGRSVGFSVSGQQ
LVMTIDENKTTKHHPFDVLEGMMQLLPESLREEKSIS
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atggagcatatattacaagcgttttcagaggattctcatacacaacgatttattgcagat
ttgaaaaaagggcaagatcatcagctcatttccggcctttcaggaagtgcccggtcgatt
ttttaccaaacggtctggtcgcaattaaacgaacctttattgatcgtcacgccaaactta
ttgaatgcacagcgcgtccatgatgatttgattaaattaatgggtgaagagaacgttcat
ctatatccagcagatgaattgattgctgcggatgtttcgttttcagggcctgaactaaga
gctcaccgcattgacacgcttgatcatatgaagaacgtcggaaaaggggtttatgtaaca
ccggttgccggtttgcgtaaattgttgccttcaaaagcccagtgggatatttctaccctg
cagacggcagacggggaagaacttgatatagaagactggctgaaaaaacttgtggcaatg
ggctattcacgaacgccaatggttaccacgcctggggaattcgccttgcgaggagggatt
cttgatgtctatccgttaaactttgagcacccggtacgcattgagctgtttgacaccgag
gtggattcgattcgcctattttcggcggaagatcaacgctctcttgcaaaactccagtcg
ttgcgcgtcttgccggcaagtgaactggtgttgtcgaagcttcaacagcggaaactggcg
gataagctggaagaccaactagcccatacgctgaaaaaaataaaagccgaagatacaaaa
gaagccttactcatgcatatacagcatgacatcgacatgcttcggcaaggaaatgtgcca
gacggcatggcgaaatacgcagccttggtcgaagagcaatcggcctttttaggcgattat
tttccggctagcggatttgtcttttttgacgagctgggccgcatccaggaaatgacggaa
acgctggagcgggaagaaggcgattggatcgtctcgctgttggaagaaggcaagtttctt
catgatgttcacttagcgtatacaattcgtgaagtgctctcaaaattaaaacagaaaatg
acctttttgtccttgtttgtccggacattcccgatggtttcagtgaaaaaatcggtcgtg
ttttcaagcaagccgatgcagtcgttccatggccaaatgcatttactgaaagcggaagta
gagcgctggtcgcttgctaaattccgcgtcttcatcgtagcccaaggagaagaacggctg
aaaaaagtacattccgtgcttgaggattatgacatcgaagcagaaattgtggattcttcc
gcagaggtgcaaggcggcaaagtttatttggtcgatggcgatttggcgaacggctttgaa
gtaccgcttcagcgcttcgcggttctcaccgattccgaactttttgccaagcaagcgaag
aaaaaaacgcgtccgcaaaagctgacgaatgcggaacgcatcaagagctattccgagatt
aaacctggcaattacattgtccatgttcaccacggaatcgggcgttatgtcggcatcgag
acgttggaaattggcggcgtccataaagattatttgcacatcgtctataaagccgatgac
aaattgtttgtgccggttgaccaaatcgatttgattcaaaaatacgtcgcttccgaagaa
aaagagccgaaactgcataaaatgggcggagcggaatggcagaagacacgcaagaaagta
tcggctgccgttcaggacattgccgatgacttgattaagttgtacgccgaacgcgaggcg
caaaaaggctttgcgttttccgaggagcaggatatgcagcgccaatttgaagcggagttc
ccatatgaggaaacggtcgaccaattgaggtcgattggagaagtgaagcgggacatggaa
aaagaacggccgatggaccgcctaatttgcggtgatgtgggctacgggaaaacagaagtg
gcaatccgcgctgcttttaaagcggtgcttgatggcaagcaagtagcctttttggtgcca
acgacaattcttgcgcagcagcattttgaaacgatgagcgaacgctttaaagattatccg
attgaagtcggtttgatgagccgtttccgttcgaaaaaacagcaaacagaaacgatcaaa
gggttgaaaaacgggtcggtggatgtggtcatcggaacccaccggattttatcaaaagac
ctggtatacaaagatctcggcttgctgattatcgatgaagaacaacgctttggcgttacc
cataaagaaaaaatcaaacaaatgaaaacgaatgttgacgtcttgacgttgacggcaacc
ccgattccgcggacgcttcatatgtcgatgattggcgtacgcgatttatcggtcatcgaa
acgccgcctgaaaaccgcttcccggtgcaaagctatgtcatggagtataacggcacgctt
gtgcgtgaagcgattgaacgggaaatggcgcgcggcggccaagtgtttttcttgtataac
cgagtcgatgatatgacgcggaaagtggaagaaattcaagccttggtgccggaagcgcgc
gtaggctatgctcatggccaaatgtctgagcgggagctggaatcggtcattataagcttt
ttggatggtgactacgatgtgctcgtaacgacaacgatcattgaaacgggcatcgatatt
ccaaacgtcaatacgttgattatccataacgccgaccgcatgggcttgtcccagctttac
cagctgcgcggacgtgtcggacgatcgagccgtgtggcctatgcttacttcatgtatcag
cgtgacaaggtgttgacggatgtggcagaaaagcgtttgatggcaatcaaagaatttacc
gaactcggttccggcttcaaaattgccatgcgcgatttgacgatccgcggagccggcaac
ctgctcggttcgcagcagcacgggtttattgactccgtcggctttgatctgtattcgcaa
atgctgaaagaagcggtagaagaacgccaaacgggaatcaagaaagaagacatcccagaa
atcgaaatctccttggacatcgatgcttacattccggattcttacgttggcgacggctac
cagaaaatccagatgtacaaacgcgtaaaaggcatcgagacggcagaagaagtggaagag
ctgcaagatgagctgatcgaccgcttcggtgacatgccgcttgaaactgatcgccttctg
cgcgttgcacgcatgaaagtttgggcacgcacggttggggtagaatcgatcaagcaaaat
ggcaaaattacctcgatccgcctgagtgaaaaaggaacctctatagtcaatggcggaaaa
ctcgtagaagactccgctaaattcggccggtcggtcggctttagtgtttctggccaacag
ctggtcatgactatcgatgaaaataaaaccaccaagcaccatccgttcgatgtgctcgaa
ggcatgatgcaactgcttccggaatcgcttcgggaagaaaagtcgattagttaa
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integrated database retrieval system
