Planococcus shixiaomingii: QWY21_00600
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Entry
QWY21_00600 CDS
T10328
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pshx Planococcus shixiaomingii
Pathway
pshx03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pshx00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
QWY21_00600 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pshx03021
]
QWY21_00600 (rpoC)
03400 DNA repair and recombination proteins [BR:
pshx03400
]
QWY21_00600 (rpoC)
Enzymes [BR:
pshx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
QWY21_00600 (rpoC)
Transcription machinery [BR:
pshx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
QWY21_00600 (rpoC)
DNA repair and recombination proteins [BR:
pshx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
QWY21_00600 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
WKA54918
LinkDB
All DBs
Position
122678..126283
Genome browser
AA seq
1201 aa
AA seq
DB search
MIDVNNFEYMKIGLASPDKIRSWSYGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLILDM
SPRSLEEVIYFASYVVIDPADTPLEKKQLLSEKEYRAYRDKFGKKFQAAMGAEAIKRLLQ
EIDLERETDSLKEELKTAQGQRRTRAIKRLEVVESFRNSGNNPDWMILDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPSIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKMYQCGLPKG
MAIELFKPFVMKELVERGLAHNIKSAKRKIERLHSEVWDVLEDVIKEHPVLLNRAPTLHR
LGIQAFEPTLVEGKAIRLHPLVCTAYNADFDGDQMAVHVPLSSEAQAEARLLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLEREGATGEGATFTGPEEVMIAYQTGHVHLHTRIAVL
AGSVNNPTFTKEQNKMLLLTTVGKVIFNEILPKSFPYINEPTNYNLQVETPAKYFVPTTT
DVRRYIQEAELVTPFKKKILGEIIAEVFTRFHITETSRMLDRMKSLGFKYSTQAGITVGV
ADIVVLPDKGEILIEAQANVDKVMKQFRRGLITEEERYARVISYWSSAKDVIQEKLMASL
DKTNPIYMMSDSGARGNASNFTQLAGMRGLMANPAGRIIELPIKSSFREGLTVLEYFIST
HGARKGLADTALKTADSGYLTRRLVDVAQDAIVRENDCGTDRGLLVGALMEGTEVIEELD
ERIVGRHAKKTVRHPETKEVIVAKDELITQDLSRLVVDAGIKEVTIRSAFTCNTKHGVCK
KCYGTNLATGDEVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEIF
ESRNPKGQAVISEINGTITEIDEIREGLKEITIQGDVETRKYLAPYNARLKVQLNDPIRR
GEVLTDGSIDPKQLLQVKDVQSVQVYLLKEVQKVYRMQGVEIGDKHVEVMVRQMFRKVRV
IEAGDTDLLPGSLLDIHQFTEANVKAVLEGNLPATSRPVILGITKASLETESFLSAASFQ
ETTRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTGMQRYRQIKIAQNEKREQAEAVSTE
S
NT seq
3606 nt
NT seq
+upstream
nt +downstream
nt
ttgatagatgttaacaattttgagtacatgaaaatcggattagcgtcacccgataaaatt
cgctcatggtcttatggagaagtcaaaaagccagaaacaattaactaccgtacattaaaa
cctgaaaaagacggtttgttctgtgaacgtattttcggtcctacaaaagactgggaatgt
cattgcggaaaatacaaacgtgttcgttataaaggtgttgtctgtgatcgctgtggcgtt
gaagttacgcgttcaaaagtaagacgtgaacgtatgggccacattgaacttgcagctcct
gtttcacatatctggtatttcaaagggattccgagccgtatgggccttatcttggatatg
tccccgcgctcactcgaagaagttatctattttgcttcttatgtagtaatcgaccctgcg
gatacaccgcttgaaaagaaacaacttctttctgaaaaagaataccgtgcatatcgcgat
aagttcggcaagaaattccaagctgcgatgggagcagaagcgatcaaacgacttctacaa
gaaatcgatcttgaacgtgaaactgactcattgaaagaagaattgaaaacggctcaaggc
caacgccgcactcgtgcgattaaacgtcttgaagtggtggaatctttccgtaactcagga
aacaaccctgattggatgattctagatgttcttccagttattccacctgaactacgtccg
atggttcaattagacggtggccgctttgcgacttccgatttaaacgatctttatcgccgc
gtaatcaaccggaacaaccgcttgaaacgattgttagatcttggtgctccaagcattatt
gttcaaaacgaaaaacgtatgcttcaggaagctgtagatgcgttgatcgacaatggtcgt
cgtggccgtcctgttaccggaccgggtaaccgtccattgaaatctctttctcatatgctg
aaagggaaacaagggcgcttccgccaaaaccttcttggtaaacgtgttgactattcaggg
cgttccgttatcgttgtgggaccaaacttgaaaatgtatcagtgcggcttgccgaaggga
atggcaatcgagttgttcaagcctttcgttatgaaagagcttgttgaacgcggacttgct
cacaacattaagagcgcaaagcgcaaaattgaacgtcttcattctgaagtttgggatgta
cttgaagatgtcatcaaggagcatccggttctattgaaccgagcaccgacccttcataga
cttggtattcaagcatttgaaccgactcttgttgaaggaaaagcgatccgtcttcatcca
cttgtatgtactgcatacaacgccgatttcgatggtgaccaaatggctgttcacgtaccg
ttatcatccgaagcacaagcagaagcaagacttttgatgcttgcagctcaaaacattttg
aacccgaaagatggaaaacctgttgtaacaccatctcaggatatggttttaggaaactat
tacttaactcttgagcgtgaaggtgctacaggagaaggtgctacttttaccggaccggaa
gaagtaatgatcgcttatcaaacaggccacgtccatcttcatacacgaatcgcagtttta
gcgggatcggttaataacccgacatttacaaaagaacaaaacaaaatgctattgctgact
acggttggtaaagtcattttcaatgaaattttgccaaagtcgttcccttatataaacgaa
ccaacaaattacaacttgcaagtagaaacaccagccaagtatttcgtgccgactactaca
gatgtccgccgttatattcaagaagctgagctagtaacaccatttaaaaagaaaatcctt
ggagaaatcatcgctgaagtattcacgcgtttccatattacggaaacttcaagaatgctt
gaccgtatgaagagccttggctttaaatactcaactcaagccggtattacagttggagtg
gcagacattgtcgtacttcctgataaaggtgaaattttgattgaagcacaagcgaacgtt
gacaaggtaatgaaacagttccgccgcggactcattactgaagaagagcgttatgcacgt
gtcatctcttactggagtagcgcgaaagacgttattcaagaaaagttgatggcttctctt
gataagaccaacccgatttacatgatgagtgactctggtgcccgtggtaacgcgtccaac
tttacacagctcgctggtatgcgcggacttatggccaacccggctggtcgtatcattgaa
ctcccaatcaaatcttcattccgtgaaggtttgacagtactcgaatacttcatttcaact
cacggtgcgcgtaaaggtcttgccgatacagcactgaaaacagccgattcagggtatttg
actcgtcgcttggtagacgttgcacaagatgcgattgtccgcgaaaacgattgtggcaca
gaccgtggtttgcttgttggggcgttaatggaaggtacggaagttattgaagagcttgac
gagcgtattgttggccgccatgcgaagaaaactgtccgccatcctgagacaaaagaagtg
attgtagcaaaagatgaattgattactcaagatttgtctcgccttgttgttgatgcgggc
atcaaagaagttacgattcgttctgcatttacttgcaatacaaagcacggcgtttgtaag
aaatgctacggtacaaacttggcgactggtgacgaagttgaagtgggcgaagcagtagga
attattgcagctcaatcaatcggtgaaccaggaactcagcttacaatgcgtacattccat
acaggtggggttgcgggtgatgatattacccaaggtcttccacgtatccaagaaattttt
gaatcgcgtaatccaaaagggcaagctgttatttctgaaatcaacggtactatcaccgaa
attgatgagattagagaaggcctgaaggaaattacgattcaaggagacgttgaaacccgt
aaatacctcgctccttataatgcacgcctaaaagtccagctgaatgatccaattcgccgc
ggtgaagtattaactgacggttcaattgatccaaagcaattgctgcaagttaaagatgta
caatctgtacaagtttatctattgaaagaagttcaaaaagtttaccgtatgcagggtgtt
gaaatcggcgataagcacgttgaagttatggttcgtcaaatgttccgtaaagttcgcgta
atcgaagccggtgatactgatttgcttccaggttcacttttggatattcaccaatttaca
gaagcaaacgtgaaagctgttctagaaggcaacttgcctgctacaagccgtcctgttatt
ctcgggatcacaaaagcttctcttgaaacagaatcattcctatcagcagcgtccttccaa
gaaacgactcgtgtcctaacagatgcagccatcaaagggaagcgcgatgaattattaggt
ttgaaagaaaacgtcattattggtaaacttgttccggcgggaactggtatgcaacgttat
cgccagatcaagattgctcaaaatgaaaagcgtgaacaagcagaagcagtcagcacagaa
tcttaa
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