Planococcus shixiaomingii: QWY21_02735
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Entry
QWY21_02735 CDS
T10328
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pshx Planococcus shixiaomingii
Pathway
pshx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pshx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QWY21_02735
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pshx03019
]
QWY21_02735
03009 Ribosome biogenesis [BR:
pshx03009
]
QWY21_02735
Enzymes [BR:
pshx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
QWY21_02735
Messenger RNA biogenesis [BR:
pshx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
QWY21_02735
Ribosome biogenesis [BR:
pshx03009
]
Prokaryotic type
rRNA helicases
QWY21_02735
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
WKA55322
LinkDB
All DBs
Position
518129..519658
Genome browser
AA seq
509 aa
AA seq
DB search
MVKFSELNISETTLKSVKRMGFEEATPIQEGTIRLGMEGKDIIGQAQTGTGKTTAFGIPL
IEKIDTKDGNVQGLVIAPTRELAIQVSEELYRLGQDKNVRILSVYGGQEIGRQIRALKNR
PQIIVGTPGRLLDHINRRTLKLDNVNTLILDEADEMLNMGFIEDIQTIMSSVPEERQTLL
FSATMPDAIRRIAEKFMKTPEIVKIKSKEMTVENIEQFFVKSVEREKFDILSRLINVQQP
ELAIIFGRTKRRVDELAHALNIRGYVAEGIHGDLSQAKRMSVLKQFKSGKVDILVATDVA
ARGLDISGVSHVYNFDIPQDPESYVHRIGRTGRAGKKGVAVTFVTPREMGYLAIVERTTK
KKMEALIPPTADEAVLGQKRVAMEQLQEMTEKNNLGDYRTFAAEMLEKFDAVDLIAAALK
TMTKEPEDTPVSISEERPLPSRGGGGYKGKSGGSGSRSGSGGGYKGSRSGANAGRPSSSS
RGASTGATRRREGGSAAGGRPGRTRRHES
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
ttggtaaaattttcagagttaaatattagcgaaacaactttaaagtccgtaaaacgtatg
gggtttgaagaagcaacaccaattcaagaaggcacaatccgtctaggtatggaaggcaag
gacattatcggccaagcacaaactggtactggtaaaacaactgcattcggtattccgttg
atcgaaaaaatcgacactaaagatggcaatgtccaaggattagttattgcgccaactcgc
gaattagcaattcaggtttcagaagaattgtacagactgggccaagataaaaacgtgcgc
attctttcagtatacggaggtcaagaaatcggccgccaaatccgtgcgcttaaaaaccgc
ccacaaatcatcgttggtacaccaggacgtcttttggaccatatcaaccgccgtacgctt
aaattggacaatgtaaacacgttgatccttgacgaagcagatgaaatgttgaacatgggc
ttcatcgaagatattcaaacaatcatgtcaagtgttccagaagaacgccaaacattgttg
ttctcagcaactatgccggatgcaatccgccgtattgcagagaaattcatgaagactcca
gaaatcgttaaaatcaaatcaaaagaaatgactgttgaaaacatcgagcagttcttcgtt
aaatcggtagagcgcgaaaaattcgatatcctttcacgtctaataaacgttcaacaacct
gaacttgcaatcatcttcggccgtacaaaacgccgggttgatgaattggcacacgctttg
aatatccgcggctatgtagctgaaggaattcacggtgacttgagccaagcaaaacgtatg
tctgtattgaagcaattcaaatcaggtaaagtcgacattcttgttgcaactgatgtagca
gctcgcggacttgatatctcaggcgtatctcacgtttacaactttgatattccacaagat
cctgaaagctatgttcaccgtatcggccgtactggccgtgcaggtaaaaaaggagtcgca
gtcacgttcgtaacaccacgtgaaatgggctacttggctatcgttgaacgtacaactaag
aaaaaaatggaagcattgattccaccaactgctgatgaggctgtactaggccaaaaacgc
gttgcaatggaacaattgcaagaaatgacagagaaaaacaacttgggcgactaccgtaca
tttgcggctgaaatgcttgagaagtttgatgctgttgacttgattgcagctgctcttaaa
acaatgactaaagagccggaagatactccagtatcaatttcggaagaacgtcctctacct
tctcgcggaggcggcggatacaaaggcaagagcggcggaagcggttctcgcagcggaagc
ggcggcggttataaaggcagccgttctggtgcaaacgctggccgtccatcatcatcaagc
cgtggagcaagcacaggcgcaacgcgtcgccgtgaaggcggaagcgctgctggcggtcgt
ccaggacgcactcgtcgccacgaatcttaa
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