Planococcus shixiaomingii: QWY21_03400
Help
Entry
QWY21_03400 CDS
T10328
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
pshx Planococcus shixiaomingii
Pathway
pshx02020
Two-component system
pshx02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pshx00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
QWY21_03400 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
QWY21_03400 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pshx03021
]
QWY21_03400 (rpoN)
Transcription machinery [BR:
pshx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
QWY21_03400 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Sigma70_r4
HTH_IclR
HTH_17
HTH_3
HTH_23
MarR_2
HTH_AraC
LacI
Sigma70_r4_2
HTH_21
HTH_20
Motif
Other DBs
NCBI-ProteinID:
WKA55440
LinkDB
All DBs
Position
660007..661320
Genome browser
AA seq
437 aa
AA seq
DB search
MELVLQQKQELNLVMTYKLRQAIELLQYSTEELCQFIKKQQEENPLIEIKERPHEVAYKE
NDFGKANFCSTAEEANRLEASEGLGMRDQLVEQAKFLYKDVRDQKVMAYIIYNLDDNGYL
SFKQDEREVYGIFGKAEIDRGIELLQAVGPKGIGARCLKECLLLQVTDECPNRQQTESLI
RNYLKLLAERKWDGLAARMNISLAEIKAIHEFILTLNPKPCAHISDFSIQYVNPDIIVES
KVNGLSFYLNDRYLPAIRFNDNYSGLLANKDETSTYIQGQFATYQWLLNSIEQRRQTIVK
IVKVILAKQEEFFKDGFIALQPLTLKEVAEEIGMHESTVSRATMNKVIQTAKGTFELRMF
FASKLETATGNDVSQTKVKMLLKSMIENEDKCKPLSDQKVTDLFNKEKGITISRRTVAKY
REELHIPPSARRRAIKG
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atggaacttgttcttcagcaaaagcaagaactgaaccttgtcatgacatacaagttaaga
caagctattgagctgctgcagtattccactgaagaactttgccaattcataaaaaaacag
caagaagaaaatccgctgattgaaataaaagaacggccacatgaagtagcatacaaggaa
aatgattttgggaaagcgaatttctgcagcacagctgaagaggcaaacagactagaggca
agcgaaggcttaggcatgagagatcagctggtcgagcaagccaagtttctctataaagat
gtacgcgaccaaaaagtcatggcttacatcatttacaatctggatgacaatggctaccta
agtttcaagcaggatgaacgcgaagtttacgggatctttggcaaagcggaaattgaccgt
ggcatcgaactgcttcaggccgtcggaccaaaagggataggggccaggtgcttgaaagag
tgcctgctgttgcaagtcacggatgaatgccctaaccgtcagcaaacagagtccctcatc
cgcaattatttaaagctgttggctgagcggaaatgggatggccttgcagcgagaatgaat
atttcgctcgctgaaattaaagcgatccacgagtttattttgacgctcaaccccaaacca
tgtgcccatatttcggacttttctatacaatatgtaaacccggatatcattgtcgaaagc
aaagtgaatggcttgtcgttttatttgaatgaccgctatttgccggctatccgctttaat
gacaactattccgggttgctggcaaataaagatgagacgtcaacatacattcagggccaa
tttgccacctatcaatggctgttgaacagcattgaacaacggcgccagacaatagtgaaa
atagtgaaagtcatacttgctaagcaagaagagttttttaaggacgggttcatcgccctt
cagcctttaacattgaaagaagtggcagaagaaatcggcatgcatgaatcgactgtcagc
cgggccacgatgaataaagtgattcaaacggcaaaagggacgtttgaacttcggatgttt
ttcgcttccaagctggaaacggcaacaggaaatgacgtctcccaaacaaaagtgaaaatg
cttttgaaaagcatgatagaaaatgaagacaaatgcaagcctctgtcggatcaaaaggta
acggatctttttaataaagagaaagggattacaatatccagacggacagtggcgaaatac
cgggaagaattgcacattccgccttctgccagacggagagcgataaagggatga
DBGET
integrated database retrieval system
