Planococcus shixiaomingii: QWY21_15640
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Entry
QWY21_15640 CDS
T10328
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pshx Planococcus shixiaomingii
Pathway
pshx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pshx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QWY21_15640 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pshx03021
]
QWY21_15640 (rho)
03019 Messenger RNA biogenesis [BR:
pshx03019
]
QWY21_15640 (rho)
Transcription machinery [BR:
pshx03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
QWY21_15640 (rho)
Messenger RNA biogenesis [BR:
pshx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
QWY21_15640 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
S1CSD-TOTE-2
ATPase_2
AAA_22
AAA
AAA_25
NACHT
Motif
Other DBs
NCBI-ProteinID:
WKA54086
LinkDB
All DBs
Position
complement(3200425..3201708)
Genome browser
AA seq
427 aa
AA seq
DB search
MAIITISSLENMTLKELYTLAKEYKLTNYSKLTKKELIFAILKTRAEQEGFFFMEGVLEI
IPSEGFGFLRPINYSPSSQDIYISASQIRRFDLRNGDKVSGKVRPPKENERYFGLLQVEA
VNGEDPEVAKERVHFPGLTPLYPDRHIRLETTPKHLSTRIMDLVAPVGFGQRGLIVAPPK
AGKTMLLKEIANSITTNHPEAELIVLLIDERPEEVTDIERSVDADVVSSTFDEVPENHVK
VAELVLERAMRLVEHKRDVIILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFF
GAARNIEEGGSLTILATALVETGSRMDEVIYEEFKGTGNMELHLDRSLAERRIFPALDIR
RSGTRKEELLIEKNQLDKLWAIRNTFSDSPDFGERFLKKLGQTKTNEDFFEQLNNEMKAH
RNNKKMI
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atggctataataacaatttcctctttggaaaacatgacgcttaaagagctttatactttg
gcaaaagaatacaaactgacgaattacagcaaattgacgaaaaaagaattgatttttgcg
attttgaaaacccgtgccgaacaggaaggtttcttctttatggaaggcgttctcgaaatc
attccttctgaaggctttggatttttacggccgatcaattattcgccaagttcacaggac
atctacatttctgcttctcaaatccgccgattcgatttgagaaatggcgacaaagtttcc
ggaaaagtacgtcctccgaaagaaaacgaacggtatttcggtttattgcaagtagaagca
gtgaacggggaagatccggaagttgcgaaagaacgcgttcatttcccagggcttacgccg
ctttatccggaccgtcacattcgtctggagactacaccgaaacatttatcgacccggatt
atggatttggtggcacccgttggttttggccagcgcggcttgattgttgcaccgccaaaa
gcggggaaaacgatgctgttaaaagaaattgccaattcaatcactacaaatcatccggaa
gcggaactaattgtgttattgatcgatgaacgcccggaagaagtgacggatattgaacgt
tcggtcgatgcggacgtagtttcctccacatttgatgaagttccggaaaaccacgtaaaa
gtggcagagcttgttttagagcgggccatgcgccttgtggagcacaaacgagacgtcatt
atcttgatggattccattacgcgtttggcgcgagcatataatttggttattccgccaagc
gggcgtacactatcaggaggaatagacccagcagcattccaccggccgaagcgctttttc
ggtgctgcccgaaacattgaagaaggcggcagcttaacgattttggcgacagctttagtt
gaaacgggttcacggatggatgaagtgatttatgaagagtttaaaggtacaggcaatatg
gagctgcatttagaccgcagcctggcagaacgccgtattttcccggcgcttgatattcga
cgctcgggaacacgcaaagaagaattgcttatcgagaaaaaccaattggataaattgtgg
gcgatccgcaatacgttctcggattcaccggatttcggagaacgcttcttgaaaaaactt
ggccaaactaaaacaaacgaagatttttttgagcagttgaacaatgaaatgaaggctcat
cgaaacaacaaaaagatgatttaa
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