Pectobacterium sinaloense: ACSJGL_15075
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Entry
ACSJGL_15075 CDS
T11740
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
psia Pectobacterium sinaloense
Pathway
psia03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psia00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACSJGL_15075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psia03019
]
ACSJGL_15075
03009 Ribosome biogenesis [BR:
psia03009
]
ACSJGL_15075
Enzymes [BR:
psia01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ACSJGL_15075
Messenger RNA biogenesis [BR:
psia03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ACSJGL_15075
Ribosome biogenesis [BR:
psia03009
]
Prokaryotic type
rRNA helicases
ACSJGL_15075
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
DeaD_C
CMS1
Cas3-like_C_2
DRTGG
AAA_22
Cho_C
Motif
Other DBs
NCBI-ProteinID:
XXR10177
LinkDB
All DBs
Position
complement(3321909..3323786)
Genome browser
AA seq
625 aa
AA seq
DB search
MTDLVTSFADLGLNTSILNALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF
SLPLLNNLKPELKAPQILVLAPTRELAVQVAEACNDFSKHMHGVNVVALYGGQRYDVQLR
ALRQGAQIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPAE
HQTALFSATMPEAIRRITRRFMKDPQEVRIQSSITTRPDISQSYWTVQGMRKNEALVRFL
EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI
ATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNV
ERTMKLTIPEVELPNAELLGQRRLAKFAAKVQQQLESSDLDMYRALLTKLQPQEELDIET
LAAALLKMAQGERPLILPPDPVFRPRREFRERDDSRGERRRDPRDSRDSRDGDRPQRRER
RDAGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGD
LLSHFTRTRILNKPMNMQLLGDAQPHERRGGGRPSGERRDGAAPRRSFGGGERREGNGGE
RRERSFNRDNRDGASRAPRRRPADA
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgactgatttagtaacttcttttgccgatttggggctgaacacctctatccttaacgcc
ctgactgatttgggctatgaaaaaccgtctccgattcaggcggaatgtattcctcacctg
ctgaacggtcgcgatgtgctgggtatggcacagaccggtagcggtaaaacagcagcgttc
tctctgccattactgaacaacctgaaacctgaacttaaagcaccacaaattttggtgctg
gcaccgacccgtgagctggcggtgcaggtagcagaggcctgcaatgatttctccaaacat
atgcacggcgtgaacgtcgtcgcactgtacggcggccaacgctatgacgtgcaactgcgc
gcgctgcgtcagggtgcgcagattgtcgtgggtacgccgggtcgtctgctggatcacctg
aaacgcggtacgctggatctgtccaacctgagtggtctggtactggacgaagccgatgaa
atgctgcgtatgggcttcatcgaagatgttgaaaacatcatggcgcagatcccggctgaa
catcagaccgcgctgttctctgcgaccatgccagaagcgattcgccgcattacgcgccgt
ttcatgaaagatccgcaggaagttcgcattcagtccagcattaccacgcgcccagacatt
agccagagctactggactgtgcagggtatgcgtaaaaatgaagcgttggtgcgcttcttg
gaagcggaagattttgatgcggcgattattttcgttcgtaccaagaatgcgacgctggaa
gtggctgaagctctggagcgtagtggttacaacagtgccgcgctgaacggtgacatgaac
caagcgttgcgtgagcaaacgctagagcgtctgaaagatggccgccttgatatcctgatc
gcgaccgacgttgcggcgcgtggtctggacgttgaacgtatcagcttggttgtcaactac
gatatcccgatggatgccgagtcttacgttcaccgtattggccgtactggccgtgcgggg
cgtgccggccgtgctctgctgtttgttgaaaaccgtgagcgtcgcctgctgcgtaacgtt
gagcgcacaatgaagctgacgattcctgaagtggaattgccaaatgcagaattgctgggt
caacgccgtctggccaagtttgctgctaaagtacagcaacagctggaaagcagcgatctg
gatatgtaccgtgcgctgctgacgaaactgcaaccgcaggaagagttggatatcgaaacg
ctggctgcggcgttgctgaaaatggcgcagggcgagcgtcctctgattctgccacccgat
cccgttttccgtcctcgtcgtgaattccgcgagcgtgatgattcacgtggcgagcgtcgt
cgcgatccgcgtgattctcgtgacagccgtgacggtgaccgtccgcaacgtcgtgagcgt
cgtgatgcgggtgaaatggaactgtatcgtattgaagtaggtcgtgatgacggtgttgaa
gttcgtcacattgttggcgccattgccaacgaaggtgatatcagcagccgctacatcggt
aacatcaagctgttcgcgtctcactcgacgatcgaactgccgaaaggtatgccgggcgac
ctgttatcacactttacccgcacgcgtattctgaacaagccgatgaacatgcaattgctg
ggtgatgctcagccgcatgaacgtcgtggcggtggccgtcctagtggcgaacgccgtgat
ggcgcagcaccacgtcgctctttcggcggtggtgaacgtcgtgaaggtaacggtggtgag
cgtcgcgaacgttctttcaaccgtgataaccgtgacggtgcttcacgcgctccacgtcgt
cgtcctgctgacgcgtaa
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