Pectobacterium sinaloense: ACSJGL_19580
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Entry
ACSJGL_19580 CDS
T11740
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
psia Pectobacterium sinaloense
Pathway
psia03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psia00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACSJGL_19580 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psia03019
]
ACSJGL_19580 (rhlB)
Enzymes [BR:
psia01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ACSJGL_19580 (rhlB)
Messenger RNA biogenesis [BR:
psia03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ACSJGL_19580 (rhlB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
CCDC138_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
XXR10994
LinkDB
All DBs
Position
complement(4304648..4305940)
Genome browser
AA seq
430 aa
AA seq
DB search
MSKTHLTEQKFSDFALHPQVIEALESKGFHNCTPIQALALPLALSGRDVAGQAQTGTGKT
LAFLASTFHYLLSHPANAERQTNQPRALIMAPTRELAVQIHSDAEALSHLTGLKLGLAYG
GDGYDKQLKVLENGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIR
WLFRRMPPTTQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSN
EEKMRLLQTLLEEEWPDRCIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILE
EFTQGNLDILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGQSGYSISLA
CEEYALNLPAIETYIGHSIPVSKYNSDALMNDLPAPKRLTRPPRSNNGPRRHSNAPRRSG
APRNNRKRAD
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaacacacttaactgaacagaagttttccgacttcgccctgcacccgcaggtt
attgaagctcttgaaagcaaagggtttcataactgtacgcctattcaggcgttagctctg
ccattggctctgtcagggcgtgatgttgcaggtcaggcgcaaaccggtaccggcaagacg
ctggcttttctcgcgtctactttccattatttgctttcacaccctgcaaatgcagagcgt
caaaccaatcaaccccgtgccttaattatggcaccaacgcgtgaactggctgttcagatt
cactctgacgcagaagcgctgtctcaccttactgggttaaaactgggtttagcctacggt
ggagacggttacgacaagcagcttaaggtgctggaaaacggcgttgatattctgatcggt
accaccggtcgcctgatcgattacgctaaacagaatcatatcaacctgggcgcgattcag
gtcgtcgtgctggacgaagcggaccgtatgtacgatctcggcttcatcaaagacattcgc
tggctgttccgccgcatgccgccaacaacacagcgtctgaacatgctcttttccgcaacg
ctctcctaccgagtgcgtgaactcgcgtttgaacagatgaataacgcagagtatgtggaa
gttgaaccggaacagaaaaccggccatcgcattaaagaagaactgttttatccgtctaac
gaagaaaaaatgcgtctgctccagacactactggaagaagagtggccggatcgctgcatt
attttcgcgaataccaagcatcgctgtgaagacatctggggccatctggctgccgacggt
catcgcgttgggctgctgacgggcgacgtcgcacagaaaaagcgtctgcgtattctggaa
gaatttactcaaggtaatctagatattctggtggcaaccgacgttgcagcgcgcggctta
catattccttctgtgacccacgttttcaactacgacctgccggatgactgcgaagactac
gttcaccgtattggccgtactggccgtgcgggacaaagcggatattctatcagcctggcc
tgtgaagagtatgcgttgaatctcccagcgatcgagacctatatcggtcacagcatccca
gtcagcaaatacaacagcgacgcgctgatgaatgatttacccgcgccgaagcgtttaacg
cgcccaccgcgttccaacaatggcccgcgccgacatagcaatgcgccgcgccgcagtgga
gcgcctcgtaataaccgtaaacgagcggattaa
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