Pectobacterium sinaloense: ACSJGL_19590
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Entry
ACSJGL_19590 CDS
T11740
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
psia Pectobacterium sinaloense
Pathway
psia03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psia00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACSJGL_19590 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psia03021
]
ACSJGL_19590 (rho)
03019 Messenger RNA biogenesis [BR:
psia03019
]
ACSJGL_19590 (rho)
Transcription machinery [BR:
psia03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
ACSJGL_19590 (rho)
Messenger RNA biogenesis [BR:
psia03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ACSJGL_19590 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_22
AAA_25
S1CSD-TOTE-2
AAA
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
XXR10996
LinkDB
All DBs
Position
4306849..4308108
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKNTPVSELIALGENMGLENQARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN
YDKPENSRNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP
KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLARKIAEKRVFPAIDY
NRSGTRKEELLTTSEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDEFFDMMKRS
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttaccgaattaaagaatacgccagtttctgagttaattgctcttggcgaaaat
atgggactggaaaaccaggcccgcatgcgtaaacaggatattatcttcgctattctgaaa
cagcatgccaaaagcggcgaggatattttcggcgatggtgtgctggagatattgcaggat
ggcttcggctttcttcgctccgcagacagctcctacctcgcaggccccgatgatatctac
gtttctcccagccaaatccgccgttttaacctccgcactggtgacaccatttctggcaag
attcgtccgccaaaagaaggtgaacgctactttgcgctgctgaaagttaacgaagtcaac
tacgacaaacctgaaaactcccgcaacaagatcctgttcgagaacctcacgccactgcac
gcaaactctcgtctgcgtatggaacgcggtaacgggtcgacagaagatctgacggcgcgc
gtgctggatctggcttcgccgattggccgtggtcaacgtggtctgattgttgccccgcct
aaagcaggtaaaaccatgctgctgcagaacattgcgcaaagcattgcttacaaccatcct
gactgcgtgctgatggtactgctgattgacgaacgtccggaagaagtgaccgagatgcag
cgtctggtgaaaggtgaggtggttgcgtcaacgtttgatgaacccgcttcccgtcacgtt
caggttgccgaaatggtgatcgaaaaagcgaagcgtctggttgaacataagaaagacgtt
atcattctgctggactccattacccgtctggcgcgtgcttacaacaccgttgttcctgct
tcgggcaaagtgttgacggggggggtggatgccaacgccctgcatcgtccgaagcgtttc
ttcggtgcggcgcgtaacgttgaagaaggtggtagcctaaccatcatcgccactgcgctg
gtggatactggttccaagatggacgaagtgatttacgaagagtttaaaggtacaggtaac
atggaactgcacctggcgcgtaaaatcgcagaaaaacgcgtcttcccggcgattgactac
aaccgttccggtacgcgtaaagaagaattgcttaccacctctgaagaattgcagaagatg
tggattctacgcaagatcatccatccaatgggtgagatcgacgcgatggaattcctgatc
aacaagttggcgatgacgaaaaccaacgatgaattcttcgatatgatgaaacgttcataa
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