Pengzhenrongella sicca: J4E96_00255
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Entry
J4E96_00255 CDS
T07613
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
psic
Pengzhenrongella sicca
Brite
KEGG Orthology (KO) [BR:
psic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psic03019
]
J4E96_00255 (hrpA)
Enzymes [BR:
psic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
J4E96_00255 (hrpA)
Messenger RNA biogenesis [BR:
psic03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
J4E96_00255 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
HA2_N
WH3_Lhr
T2SSE
ABC_tran
nSTAND3
NACHT
SLFN-g3_helicase
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QTE29549
UniProt:
A0A8A4ZEW2
LinkDB
All DBs
Position
complement(56940..61544)
Genome browser
AA seq
1534 aa
AA seq
DB search
MGEHEVGTDGGGPTPHESATASTPTTPTTPTRGRRRRGGGPRARGGAPRTTDTKARGSDR
ADRGDRRDHGGEHRPEQVDAQQTARVGRKAQVRRAVVVPPIHYPPDLPVSARRDDISATI
RDHQVVIVSGETGSGKTTQLPKILLELGRGRAGQIGHTQPRRIAARTVAERIAEEIGTPL
GEIVGYQVRFTDTSSDGTLVRVMTDGILLAQIQRDPMLRAYDTLIIDEAHERSLNIDFIL
GYLTRLLPQRPDLKVVITSATIDSARFAEHFASADGAPAPVVEVTGRTYPVEIRYRPLTP
DPPEAGAGAPAARAPKQDERDPLTAVCEAVDELCAEGPGDILVFFSGEREIRDAEDALVG
HLGPRVADQRRSDSVEIIPLYSRLSSAEQHKVFERHSTRRVVLATNVAETSLTVPGIRYV
VDPGTARISRFSKATKVQRLPIEPISQASANQRAGRCGRVADGIAIRLYSEADFESRPEF
TEPEILRTSLAAVILQMVAVGVASTPDDVAKFPFVEPPDTRSIRDGVQLLTELGALEGVA
NGPGARLTEVGRALAQLPMDPRLGRMIVEGGRRGVAREVIIIAAALSIQDPRERPLEQRQ
QADQLHARFADPTSDFLTYLNLWEHVKDSQRELSSSAFRRMCRNEHLNYMRLREWQDVVT
QLRQMAKPLGIRVEPPAPRSAPDAAIPAATSSGPTGATSSAPAAPRRRTAPGAAQTQLAS
DTGPDPTALRLDWDGDRIHVSLLSGLLSQLGMQEVTEVRAAAAHPQRKPPASARKGGRNE
YLGARGARFAIFPGSPLSRKPPAWIMVGELVETSRLWGRDAARIQPEWAEDLAAHLVKRT
YSDPAWSTKQGAAMASEKVLLYGVPIVAQRRVLYAKVDPEHARELFIRHALVDGEWTTHH
AFFHDNRALLAEAESLEHRARRRDLVVDDDALYAFYDERVPADVVSARHFDTWWRTAQRT
EPDLLDFTLAMLVPDTELGAVSETDFPDVWPQGDLELPLTYQFEPGTDADGVTVHLPVVV
LNRVRPEGFDQMVPGVREELVVALIRSLAKPVRVQLVPAPDVARDVVGWIDANLPSWLDT
VRAGDMAGSMHDAVAAAVRELRGVEIPADAWDDERLPAHLRMTFRVEEERGSASVVVDEG
KDLVVLQRRLAAHTQDAVRVAVRSAVRDAVRESARESARAATAAGPTTAGGRAAPVGTTA
GGGPRPSAPARPAPGSGAGAGSAGNPETSAAPAIAERTALTTWPTGLDGGRIPDLVETPV
AGGLTVRGYPALVEERGPARELQVSLRVLADPARQAAAHARGLRRLLLLETGLATARITS
RWSGTQALTLAASPYRSTPALVADVQLATVGSLLDAAAPTAGVRDLVTYTRVRDQARGEL
EDAVHRTVADVVTVLTAARELDGAVRAATSLALLNTLQDIREQSAALVHDGFVAEAGAAR
LPHLARYLRAARHRLTKAAQDPNRDAEIGWRIRDLEDAYAQARQRAASAAPDPVRDAALA
EVRWMLEELRVSLFAQQLGTPTPISEKRIRAILT
NT seq
4605 nt
NT seq
+upstream
nt +downstream
nt
atgggcgagcacgaggtgggcacggacggcgggggcccgaccccgcacgagtcggcgacc
gcgtcgaccccgaccacgccgaccaccccgacccgcggccgacgacgtcgcggcgggggt
ccgcgcgcccgcggcggggcgccgcggaccactgacacgaaggcacgcggcagcgaccgc
gccgatcgaggcgatcgccgcgaccacggcggcgagcaccgccccgagcaggtggacgcg
cagcagacggcccgggtgggccgcaaggcccaggtgcgccgcgccgtcgtcgtcccgccg
atccactacccgcccgacctgcccgtctccgcgcggcgcgacgacatctccgcgacgatc
cgcgaccaccaggtcgtgatcgtctccggcgagaccgggtccggcaagacgacccagctg
cccaagatcctgctcgagctcggcaggggccgcgccgggcagatcgggcacacgcagccg
cggcgcatcgccgcgcggacggtcgcggagcggatcgcggaggagatcggcacgccgctc
ggcgagatcgtcgggtaccaggtccggttcaccgacacctcgagcgacggcacgctcgtg
cgggtcatgaccgacggcatcctgctcgctcagatccagcgcgacccgatgctgcgcgcc
tacgacaccctgatcatcgacgaggcgcacgagcgctcgctcaacatcgacttcatcctc
gggtacctcacgcgcctgctgccgcagcgcccggacctcaaggtcgtcatcacctccgcg
acgatcgactccgcgcggttcgccgagcacttcgcctccgccgacggcgcgcccgcgccg
gtcgtggaggtcaccggccgcacctacccggtcgagatccggtaccgcccgctcacgccc
gatccgcccgaggccggcgcgggggcccccgccgcgcgcgcgcccaagcaggacgagcgc
gacccgctcacggccgtctgcgaggcggtcgatgagctgtgcgccgagggcccgggcgac
atcctcgtgttcttctcgggcgagcgcgagatccgcgacgccgaggacgcgctcgtgggc
cacctcggcccgcgggtcgccgaccagcgccgctcggactccgtcgagatcatcccgctg
tactcgcgcctgtcgtccgccgagcagcacaaggtgttcgagcggcacagtacgcgccgc
gtcgtgctcgccacgaacgtcgccgagacgtcgctgacggtgccgggcatccggtacgtc
gtcgacccgggcaccgcgcggatctcgcggttctcgaaggcgaccaaggtccagcggctg
ccgatcgagccgatctcccaggcgagcgcgaaccagcgcgcgggccggtgcgggcgcgtc
gcggacggcatcgcgatccggctgtactccgaggccgacttcgagtcccggcccgagttc
accgagcccgagatcctgcgcacgtcgctggccgcggtcatcctgcagatggtcgcggtc
ggggtcgcctccacgcccgacgacgtcgcgaagttcccgttcgtcgagccgcccgacacg
cgctcgatccgggacggggtccagctgctcaccgagctcggcgcgctcgagggcgtcgcg
aacggccccggcgcgcggctgaccgaggtcggccgggcgctcgcgcagctgccgatggac
ccgcggctgggccggatgatcgtcgagggcgggcgccgcggcgtcgcgcgcgaggtcatc
atcatcgccgccgcgctgtccatccaggacccgcgcgagcgcccgctcgagcagcgccag
caggccgaccagttgcacgcgcggttcgccgacccgacctccgacttcctcacgtacctg
aacctgtgggagcacgtgaaggactctcagcgcgagctctccagctcggcgttccgccgg
atgtgccgcaacgagcacctcaactacatgcgcctacgcgagtggcaggacgtcgtgacg
cagctgcgccagatggccaagccgctcggcatccgggtcgagccgcccgcgccgcggagc
gcgcccgacgcggccatccccgccgcgacgtcgtcgggaccgaccggcgcgacgtcgtcg
gcccccgccgcgccccggcgccgcaccgccccgggcgccgcgcagacccagctcgcgagc
gacaccgggcctgacccgacggcgctgcggctcgactgggacggcgaccgcatccacgtc
tcgctgctgtccggcctgctctcgcagctcggcatgcaggaggtgaccgaggtgcgcgcc
gccgcggcccacccccagcgcaagcccccggcgtcggcccgcaagggcgggcgcaacgag
tacctgggggcgcgcggcgcgcggttcgcgatcttccccggctcgccgctgtcccgcaaa
cccccggcctggatcatggtcggcgagctcgtggagacctcgcggctgtgggggcgcgac
gccgcccggatccagcccgagtgggcggaggacctcgccgcgcacctggtcaagcgcacg
tactccgacccggcgtggtccacgaagcagggcgccgcgatggcgtccgagaaggtgctg
ctctacggcgtcccgatcgtcgcccagcgccgcgtgctgtacgcgaaggtcgaccccgag
cacgcgcgcgagctgttcatccggcacgcgctcgtcgacggcgagtggaccacgcaccac
gcgttcttccacgacaaccgcgcgctgctggccgaggccgagagcctcgagcaccgcgcg
cgccgccgcgacctcgtggtcgacgacgacgcgctctacgccttctacgacgagcgcgtg
ccggccgacgtcgtctccgcgcggcacttcgacacgtggtggaggacggcgcagcgcacc
gagcccgacctgctcgacttcacgctcgcgatgctcgtgcccgacaccgagctcggggcg
gtcagcgagaccgacttcccggacgtctggccgcagggcgacctcgagctgccgctgacg
taccagttcgagccgggcaccgacgccgacggcgtgaccgtgcacctcccggtcgtggtg
ctgaaccgcgtgcgccccgagggcttcgaccagatggtccccggcgtccgcgaggagctc
gttgtcgcactcatccgctcgctcgcgaagcccgtgcgcgtgcagctggtgccggcgccc
gacgtcgcgcgcgacgtcgtcggctggatcgacgcgaacctgccgtcgtggctcgacacg
gtgcgggcgggcgacatggcggggtccatgcacgacgccgtggccgcggcggttcgcgag
ctgcgcggggtcgagatccccgccgacgcgtgggacgacgagcggctccccgcgcacctg
cgcatgacgttccgggtcgaggaggagcgcggcagcgcgtccgtcgtcgtcgacgagggc
aaggacctggtcgtgctccagcgccggctcgccgcgcacacccaggacgccgtccgggtc
gcggtgcgctcggcggtgcgcgacgccgtgcgggagtcggcacgggagtcggcgcgggcc
gcgacggcggccggcccgaccacggccggcggtcgtgcggcaccggtcggtacgactgcc
ggcggtggtccccggcccagcgctcccgcccggccggcccccggatcgggcgccggcgcc
ggtagcgccggcaaccccgagacctccgctgcgcccgcgatcgcggagcgcaccgcactg
accacctggccgaccggcctcgacggcgggcgcatccccgacctggtcgagacgcccgtc
gccggcggactcaccgtgcgcgggtacccggcgctcgtcgaggagcgcggccctgcccgc
gagctccaggtctcgctgcgggtcctggccgacccggcccggcaggccgcggcgcacgcg
cgcgggctgcgcagactgctgctcctggagaccgggctcgcgacggcgcgcatcacgtcg
cgttggtccgggacgcaggcgctcacgctcgccgcgagcccctaccgcagcaccccggcg
ctcgtcgccgacgtgcagctcgccaccgtcggctcgctgctcgacgccgcggcgcccacg
gccggggtgcgcgacctggtcacgtacacacgggtccgggaccaggcgcgtggcgagctc
gaggacgccgtccaccgcacggtcgccgacgtcgtgaccgtgctcacggcggcgcgcgag
ctcgacggcgccgtccgggcggccaccagcctcgccctgctgaacacgttgcaagacatc
cgcgagcagtcggcggcgctcgtgcacgacggcttcgtcgccgaggcgggtgcggcgcgc
cttcctcatctcgcgcggtacctccgcgcggcgcggcaccgcctcaccaaggccgcccag
gacccgaaccgggacgccgagatcggctggcggatccgtgacctcgaggacgcctatgcg
caggcgcgccagcgcgcggcgagcgccgctcctgacccggtccgggacgcggccctcgcg
gaggtccgctggatgctcgaggagctgcgcgtcagcctgttcgcccagcagctcggcacc
ccgacgccgatctcggagaagcggatccgcgcgatcctgacctga
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