Pengzhenrongella sicca: J4E96_01350
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Entry
J4E96_01350 CDS
T07613
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
psic
Pengzhenrongella sicca
Brite
KEGG Orthology (KO) [BR:
psic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psic03032
]
J4E96_01350 (topA)
03400 DNA repair and recombination proteins [BR:
psic03400
]
J4E96_01350 (topA)
Enzymes [BR:
psic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
J4E96_01350 (topA)
DNA replication proteins [BR:
psic03032
]
Prokaryotic type
DNA Topoisomerases
J4E96_01350 (topA)
DNA repair and recombination proteins [BR:
psic03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
J4E96_01350 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
HC2
Toprim_4
Toprim_2
Extensin_1
Motif
Other DBs
NCBI-ProteinID:
QTE29727
UniProt:
A0A8A4ZGV7
LinkDB
All DBs
Position
307456..310365
Genome browser
AA seq
969 aa
AA seq
DB search
MSRKLVIVESPAKARTIAGYLGAGYEVEASVGHIRDLPQPSELPADMKKGPFGKFAVDVH
NGFEPYYVVDADKKKKVAELKRLLKDADELFLATDEDREGEAIAWHLLQELKPKVPVHRM
VFHEITREAIQRALENTRDLDAHLVDAQETRRILDRLYGYEVSPVLWRKVRQGLSAGRVQ
SVATRLVVERERERMAFRAADYWDVKAQFATDDAGEPAFGARLATVDGARVATGRDFDDQ
GSLTSTTVVHLDESAARTLVTALEHADFAVRSLDTKPYTRKPAAPFTTSTLQQEASRKLR
LGSRQTMRTAQSLYENGYITYMRTDSPVLSVQAIDAARRQAAELYGPEFVPSSPRVYSTK
SKGAQEAHEAIRPAGDSFRTPAQVARELSGDQFKLYELIWKRTVASQMADARGSTASVKI
GARASDGRDAVFAASGTVITFRGFMAAYEEGRDSDRYADDAAAPSAGKGDEARLPQMAQG
DALTASDLDADGHQTSPPPRFTEASLIKALEERGIGRPSTYAATISVIQDRGYVSNRGQA
LVPSWLAFAVTRLLEENFHWLVDYRFTASMEEDLDAIAAGDKNRVEWLSRFYFGDVDGAG
AGEVEGLSHAVENLGEIDAREVNSIPIGEGITLRVGRYGPYLEDSAAPLTDGGDPRRAAV
PEELAPDELTVAKARELLETQAEGDQVLGTDPVTGTSIVARNGRYGPYVTELLPEPELDP
ALSAAAKKKALAALPKPRTGSLLKSMQLQTVTIDDALKLLSLPRTVGIDPESGDPITAQN
GRYGPYLKKGTDSRTLATEDLIFEVTLEEALAIYAQPKRGRGGSAAAPLRELGVDPVSQK
PVVVKEGRFGAYVTDGETNGTLRTEDSVEAITLERASELLADKRARGPVKGRKTAARKAA
PKKAAPKKAAVKKTAVKKAAVKKTAVKKTAVKKAAVKKAPAKKAAGTTAPAKAAATASAA
VPARATAAR
NT seq
2910 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgcaagctcgtcatcgtggagtcgccggcgaaggcgcgcacgatcgccggctac
ctcggcgccggttacgaggtcgaggccagcgtcgggcacatccgtgacctgccgcagccc
tccgagctgcccgcggatatgaagaagggcccgttcggcaagttcgccgtcgacgtgcac
aacggcttcgagccgtactacgtcgtggatgcggacaagaagaagaaggtcgcggagctc
aagcggctgctcaaggacgccgacgagctcttcctggccactgatgaggaccgcgagggc
gaggccatcgcgtggcacctgctccaggagctcaagccgaaggtgcccgtgcaccggatg
gttttccacgagatcacgcgcgaggcgatccagcgcgcgctcgagaacacccgcgacctc
gacgcgcacctcgtggacgcgcaggagacccgccggatcctcgaccgcctgtacggctac
gaggtctcgcccgtgctctggcgcaaggtccgccagggcctgtccgccgggcgcgtgcag
tccgtcgcgacccggctcgtcgtcgagcgcgagcgtgagcggatggcgttccgggccgcg
gactactgggacgtcaaggcccagttcgcgaccgacgacgccggcgagcccgccttcggc
gcgcggctcgcgaccgtcgacggcgcgcgcgtcgcgaccggccgggacttcgacgaccag
ggctcgctgacctcgacgaccgtggtccacctcgacgagtcggcggcgcgcacgctcgtg
accgcgctcgagcacgcggacttcgccgtccgcagcctcgacaccaagccgtacacccgc
aagccggccgcgccgttcacgacgtcgacgctgcagcaggaggcctcgcgcaagctgcgc
ctcggctcccgccagacgatgcgcaccgcgcagtcactgtacgagaacgggtacatcacc
tatatgcggaccgactcgcccgtgctgagcgtgcaggcgatcgacgccgcgcgccgccag
gcggccgagctgtacggccccgagttcgtgccgagctcgccccgcgtctactccaccaag
agcaagggcgcccaggaggcgcacgaggcgatccgccccgccggcgactcgttccgtacc
cccgcgcaggtcgcgcgcgagctctccggcgaccagttcaagctctacgagctgatctgg
aagcgcaccgtcgcctcgcagatggcggacgcgcgggggtcgacggcctccgtcaagatc
ggtgcgcgcgccagcgatggccgcgacgctgtcttcgccgcctcgggcacggtcatcacc
ttccgcggtttcatggccgcctacgaggagggccgcgactcggaccgctacgcggacgac
gccgccgcgccgtcggcgggcaagggcgacgaggcccggctgccgcagatggcccagggc
gacgcgctgaccgcgagcgacctcgacgccgacgggcaccagacgtccccgccgccgcgc
ttcacggaggcgagcctgatcaaggcgctcgaggagcgcggcatcggccggccttcgacg
tacgcggccacgatctccgtcatccaggaccgcgggtacgtctccaaccgcgggcaggcg
ctcgtgccgagctggctcgcgttcgcggtgacccgcctgctcgaggagaacttccactgg
ctggtcgactaccggttcaccgcgagcatggaggaggacctcgacgcgatcgccgccggg
gacaagaaccgcgtcgagtggctgagccggttctacttcggcgacgtcgacggcgccggg
gcgggcgaggtcgagggcctgagccacgccgtcgagaacctcggcgagatcgatgcccgc
gaggtcaactccatcccgatcggcgagggcatcacgctgcgcgtcggccggtacggcccg
tatctcgaggactcggcggccccgctgaccgacggcggggacccgcgtcgcgcggccgtc
ccggaggagctcgcgcccgacgagctcaccgtcgcgaaggcccgcgagctgctcgagacc
caggccgagggcgaccaggtgctcggcaccgacccggtgacgggcacgtcgatcgtggcg
cgcaacggccgctacggcccgtacgtcaccgagctgctgcccgagcccgagctggacccg
gccctgtcggccgccgcgaagaagaaggcgctcgcggcgctccccaagccccgcacggga
tcgctgctgaagtccatgcagctgcagaccgtcacgatcgacgacgcgctcaagctgctc
tcgctgccgcgaaccgtcgggatcgaccccgagtcgggcgacccgatcaccgcgcagaac
gggcgctacgggccgtacctgaagaagggcaccgactcgcgcacgctcgcgaccgaggac
ttgatcttcgaggtcacgctcgaggaggcgctggcgatctacgcccagcccaagcgcggg
cgcggcggctcagccgccgccccgctccgcgagctcggggtggaccccgtctcccagaag
cccgtcgtggtcaaggagggccgcttcggcgcctacgtgaccgacggcgagacgaacggg
accctgcgcaccgaggactcggtcgaggcgatcaccctcgagcgcgcctccgagctgctc
gccgacaagcgggcgcgcgggccggtcaagggtcgcaagaccgcggcccgcaaggccgcg
ccgaagaaggccgcgcccaagaaggctgccgtgaagaagaccgcggtgaagaaggctgcc
gtgaagaagactgcggtcaagaagactgcggtcaagaaggctgcggtgaagaaggccccg
gcgaagaaggccgccggcacgacggcgcccgcgaaggccgccgcgacggcgtcggcggcc
gtgcccgcgagggcgaccgccgcacgctga
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