Pengzhenrongella sicca: J4E96_10855
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Entry
J4E96_10855 CDS
T07613
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
psic
Pengzhenrongella sicca
Brite
KEGG Orthology (KO) [BR:
psic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psic03019
]
J4E96_10855 (hrpB)
Enzymes [BR:
psic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
J4E96_10855 (hrpB)
Messenger RNA biogenesis [BR:
psic03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
J4E96_10855 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
AAA_19
AAA_25
AAA_22
CON_HrpB
AAA_30
AAA_11
ParA
Motif
Other DBs
NCBI-ProteinID:
QTE27912
UniProt:
A0A8A4Z7T6
LinkDB
All DBs
Position
complement(2386152..2388683)
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AA seq
843 aa
AA seq
DB search
MLEDPISRLLAAPPDLPVRSGLAELVAAIGAGGTAVLQAPPGTGKTTLVPPALAALVAGR
VVVTQPRRIAARAAARRLAYLLGEPVGESVGYAVRGEHRGGAATRVEFVTTGVLLRRLQR
DPDLPGTGGVVLDEVHERHLDGDLALALLVDVRANLRDDLALVAMSATVEAERTADLLGG
AAGAPMIAVRGSLHPVAELWCPPPPRVARSDDRGVTPGFLDHVAACVRRALAEQVGDVLV
FLPGAGEVMQVARRLAGVGADVRPLHGRLSHREQDLALTQGTRRRVVVSTAVAESSLTVP
GVRVVVDAGLARQPRTDHRRGLAGLVTVSVSRAGATQRAGRAGREAPGAVYRCWSEGDHA
RLPEHPEPEIATADLTSFALDLACWGSPDGTGLALMDPPPAPAMAAARAVLVGIGAVGPA
GAVTPRGRTIAGVGADPRLARALLDGAAVLGPRRAAEIVAVLADDVRAPGGDLVAALRSL
RRGGPDAAAWAEQTRRLRAAVPASRGRAAHGTDRGTEHLTDDLAVGLVVALAHPDRIARL
RSSGSAYLMASGTGAVLAAGSPLTGLGWLAIADADRGAGRRDAVVRSAAPIDESLALEAA
PFLLRDEDHVGWDGGTVVARRISWLGAIELASAPLPDPPRALVAAAVRVGLDRDGLGLLP
WSAAATTLRRRLAFLHATFGPPWPDVGDEALTRTLDAWLGPDLARVRSARDLQRIGVPAA
LRRLLPWPEAGRLDELAPERVTAASGAKVAVDYTADEPVLAVRIQDVFGWTATPRIAAGR
VPLVLHLLSPARRPVAVTADLASFWRTGYPQVRGELRRRYPRHAWPDDPLTATATRTGGI
ARH
NT seq
2532 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgaggacccgatcagccggctgctcgccgccccgcccgacctgccggtccggtcc
gggctcgccgagctcgtcgccgcgatcggcgcgggcggcaccgccgtgctgcaggcgccg
cccggcaccggcaagacgacgctcgtgccgcccgcgctcgccgcgctggtggccggccgc
gtcgtcgtgacccagccgcggcggatcgcggcgcgcgcggcggcgcgccggctggcgtac
ctgctgggcgagccggtcggcgagagcgtcgggtacgccgtccgcggggagcaccgcggc
ggcgccgcgacccgggtcgagttcgtgaccaccggcgtgctgctgcggcggctccagcgg
gaccccgacctgccgggcaccgggggagtcgtcctcgacgaggtgcacgagcgccacctg
gacggcgacctcgcgctcgcgctgctcgtggacgtccgggcgaacctgcgcgacgacctc
gccctcgtggccatgtcggccaccgtcgaggccgagcgcacggccgacttgctcggcggc
gccgccggagcgccgatgatcgccgtccgggggtcgctgcaccccgtggccgagctctgg
tgcccgccgccgccgcgcgtcgcgcggtccgacgaccgcggcgtcaccccgggcttcctc
gaccacgtcgccgcgtgcgtgcggcgggccctggccgagcaggtcggcgacgtcctcgtg
ttcctcccgggcgcgggggaggtcatgcaggtcgcgcgccggctcgccggcgtcggcgcc
gacgttcgcccgctgcacggccggctctcgcaccgcgagcaggacctcgcgctgacccag
ggcacgcgccgccgggtcgtggtctcgaccgcggtggccgagtcctcgctgaccgtcccg
ggggtccgcgtcgtggtcgacgccggcctcgctcgccagccgcgcacggaccaccgccgc
gggctcgcggggctcgtgaccgtcagcgtgagccgggcgggcgcgacgcagcgcgcgggc
cgggccgggcgcgaggcgcccggggcggtctatcgctgctggtccgagggcgaccacgcg
cgcctgccggagcatcccgagcccgagatcgcgacggcggacctcacctcgttcgcgctc
gacctcgcctgctggggcagcccggacggcaccgggctcgcgctcatggacccgccgccg
gcccccgcgatggcggccgcccgggccgtcctcgtcgggatcggcgcggttggcccggcc
ggcgccgtgacgccgcgcggccggaccatcgccggcgtcggcgccgacccgcggctcgcc
cgtgcgctgctcgacggcgcggcggtcctcgggccgcgccgcgccgccgagatcgtggcc
gtgctcgccgacgacgtgcgcgcgccgggcggcgacctcgtcgcggcgctgcggagcctg
cgccgcggcggcccggacgccgccgcgtgggccgagcagacccgccggttgcgggccgcg
gtccccgcgagccggggccgcgccgcccacggcaccgatcgcggcaccgaacacctcacg
gacgacctcgccgtcgggctcgtcgtcgccctcgcgcacccggatcggatcgcccggctg
cgctcgagcggctccgcgtacctgatggcctcgggaacgggcgccgtgctcgcggccggg
agcccgctcacgggcctggggtggctcgcgatcgccgacgccgatcgcggcgccgggcgg
cgggacgccgtcgtgcggtccgcggcgccgatcgacgagtccctggcgctcgaggccgcg
cccttcctgctgcgcgacgaggatcacgtcgggtgggacggcggcacggtggtcgcgcgg
cgcatcagctggctcggggcgatcgagctggcgtcggccccgctgccggatccgccccgg
gcgctggtcgcggcggccgtgcgcgtcgggctggaccgcgacgggctgggcctgctgccc
tggtcggcggcggcaacgacgctgcggcggaggctggcgttcctgcacgcgacgttcggg
ccaccgtggccggacgtcggcgacgaggcgctcacccgcaccctcgacgcctggctcggc
ccggacctggcccgcgtgcgtagcgcacgggacctgcagcggatcggtgtgcccgccgcc
ctgcgccggctgctgccgtggccggaggcgggccggctggacgagctcgcccccgagcgg
gtcaccgcggcgagcggcgcgaaggtggcggtcgactacacggcggacgagcccgtgctc
gcggtccggatccaggatgtgttcgggtggacggccacgccgcggatcgcggccggccgg
gtgccgctggtgctgcacctgctctcgccggcccggcggccggtcgccgtgaccgccgac
ctcgcgtcgttctggcgtaccgggtacccgcaggtccgcggcgagctgcggcggcgttac
ccgcggcacgcgtggcccgacgacccgctgaccgccacggcgacccgaacgggtggaatc
gcacggcattag
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