Pengzhenrongella sicca: J4E96_14950
Help
Entry
J4E96_14950 CDS
T07613
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
psic
Pengzhenrongella sicca
Pathway
psic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J4E96_14950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psic03019
]
J4E96_14950
03009 Ribosome biogenesis [BR:
psic03009
]
J4E96_14950
Enzymes [BR:
psic01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
J4E96_14950
Messenger RNA biogenesis [BR:
psic03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
J4E96_14950
Ribosome biogenesis [BR:
psic03009
]
Prokaryotic type
rRNA processing factors
J4E96_14950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
QTE28642
UniProt:
A0A8A4Z9R6
LinkDB
All DBs
Position
complement(3255054..3258305)
Genome browser
AA seq
1083 aa
AA seq
DB search
MTLDTTPDSTTSASTAAGSAPAAAGDRPVKAPRRRATRKTAAPSAETAPAAAATEAAPAT
VSDQAAPAAASAEAAPAASARAPRKAAAKKAPAKRATSTRAAKKAVAPVDAPVAPAEVPA
AEAPAPEQPAAQQPAAEQAAEPELSAAAKRSASSTFDVFAEFAAAANAPAKAPRRSVRRS
RIASEPVVTPAASVSIVSEPTVSEPVVPEPAATAPAAPADEAPVVHSATELLFQAPDATT
RPRRRRAQSPAGPPRAADTRDDQARAHQSAPVETSPAADLAVEDEDEAIAEIAVAMPPRR
ASRRRGSSRAADAVDELEPAAATQTAVPAAAVAGSADENATEQASDEPADDDEDGGPRRR
RRRGGRGRRGRSGSDGSDTDQSDADNQDNQADGRREHRTDDREPRPEHAEVASGDAAAAE
DGSDDADETGDADGEGGSSRRRRRRRRSGRGTDSVESEPAPQARTRGSRSGSGGSGSGSN
SNIGATGADEVTALRGSTRLEAKRQRRREGRDAGRRRTIITESEFLARRESVDRTMVVRE
IDGATQIAVMEDGVLVEHYVSRQAQASMAGNVYLGRVQNVLPSMEAAFIDVGKGRNAVLY
AGEVNWDAAGLEGQPRRIEQALKSGDSVLVQVTKDPIGQKGARLTSQVTLAGRYLVYVPG
GGMTGISRKLPDNERARLKKLLREIVPDSAGVIVRTAAEGASEDELRADILRLQEQWTAI
EKKAKSASAPALLQGEPDLAIRVVRDIFNGDFGSLVVQGDEAWDTISGYIGALAPDLAEK
VTRWTGTGDVFSAHRVDEQLAKGMDRKVWLPSGGSLVIDRTEAMTVVDVNTGKFTGAGGT
LEETVTRNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLVECLGRDRTKH
QVAEVTSLGLVQMTRKRVGQGLVEAFSETCEHCMGRGFIVHTDPIEKHGHVDDGLQGGHP
QGGHSHGSSSTSDDSDGPSKGGRRKRGGAKETLTGALPLPVAVPVLPQARAAVKATLATI
AAAAAHAHDTALEEQTGRSGPADLPVGFDSDEGLELFPVAPEVFAAGSDGDAGTRPASSQ
GAE
NT seq
3252 nt
NT seq
+upstream
nt +downstream
nt
gtgacgctcgataccacgcccgacagcaccaccagcgcatcgacggccgcaggcagtgcg
cctgcagccgcaggcgaccggcccgtcaaggctccccgccgccgcgcgacccgcaagacc
gcagcccccagcgccgagacagcgcccgccgcagccgcgacggaggcggcgcccgccact
gtgtccgatcaggcggcgcccgccgctgcgtcggctgaggcggctcccgccgcgtcggcc
cgcgcaccccgcaaggccgccgctaagaaggccccggccaagcgggcgacgtcgacccgc
gcggccaagaaggccgtcgcgccggtggacgcgccggtcgcgcccgccgaggtgcccgcc
gccgaggctcctgcccccgagcagcccgccgcccagcagccggccgccgagcaggcggcc
gagccggagctgtccgccgccgcgaagcgctcggccagctcgacgttcgacgtcttcgcc
gagttcgccgccgcggccaacgcgccggccaaggcgccgcgccggtccgtgcgcaggtca
cgcatcgcgagcgagcccgtcgtgacgccggcggccagcgtgtcgatcgtctccgagccg
accgtctccgagccggtcgtccccgagccggccgcgacggcgcccgccgcgccggccgac
gaggcgcccgtcgtgcactccgcgaccgagctgctgttccaggcgccggacgcgacgacc
cgcccgcgccgtcggcgtgcccagtcgcccgctggcccgccccgcgccgccgacacccgt
gacgaccaggcccgcgcccaccagtcggccccggtcgagaccagcccggccgccgacctc
gcggtcgaggacgaggacgaggcgatcgccgagatcgccgtcgcgatgccgccccggcgc
gcctcgcgccggcgcggttcctcgcgcgcagccgacgccgtcgacgagctcgagcctgcc
gccgcgacgcagaccgccgtcccggccgccgcggtggccggctccgctgacgagaacgcg
acggagcaggcgagcgacgagcccgccgacgacgacgaggacggcggcccgcgccgtcgc
cgccgccgtggcggccgcggtcgtcgcgggcgcagcggctcggacgggtccgacacggac
cagtcggacgctgacaaccaggacaaccaggccgacggccgtcgcgagcaccgcacggac
gaccgcgagccccggcccgagcacgccgaggtcgcgtccggcgacgccgccgcggccgag
gacggctcggacgacgccgacgagacgggcgacgccgacggcgagggcgggtcgagccgt
cgccgccgccgtcgtcgccgcagcgggcgcgggaccgacagcgtcgagtccgagcccgcc
ccgcaggcgcgcacccggggctcgcgctccggcagcggcggatcgggttcgggctcgaac
agcaacatcggcgccacgggcgccgacgaggtcaccgcgctgcgcggctcgacgcggctc
gaggccaagcgtcagcggcgccgtgagggccgcgatgccggccgccggcgcacgatcatc
accgagtcggagttcctcgcccggcgcgagtccgtggaccgcacgatggtggtgcgcgag
atcgacggcgccacccagatcgccgtcatggaggacggggtgctcgtcgagcactacgtc
tcccgccaggcgcaggcctcgatggcgggcaacgtctacctcggccgggtgcagaacgtg
ctcccgagcatggaggcggcgttcatcgacgtgggcaagggccgcaacgcggtgctgtac
gccggcgaggtgaactgggacgcggccgggctcgagggccagccgcgccgcatcgagcag
gcactcaagtcgggcgactccgtgctcgtgcaggtcacgaaggacccgatcgggcagaag
ggtgcccggctcacgtcgcaggtcacgctcgccggccggtacctcgtctacgtgcccggt
ggcggcatgaccggcatctcccgcaagctcccggacaacgagcgcgcccgcctgaagaag
ctgctgcgcgagatcgtcccggactcggcgggcgtcatcgtgcgcaccgccgccgagggg
gcgagcgaggacgagctccgcgccgacatcctgcggctgcaggagcagtggaccgcgatc
gagaagaaggccaagtcggcctcggcgcccgcgctgctgcagggcgagcccgacctcgcg
atccgcgtcgtccgcgacatcttcaacggcgacttcggctcgctcgtggtgcagggcgac
gaggcctgggacacgatctcggggtacatcggcgcgctcgcgcccgacctcgccgagaag
gtcacgcgctggaccggcaccggcgacgtgttctcggcgcaccgcgtcgacgagcagctc
gccaagggcatggaccgcaaggtctggctgccctcgggcggctcgctcgtgatcgaccgc
accgaggcgatgaccgtcgtcgacgtcaacaccggcaagttcaccggcgcgggcggcacg
ctcgaggagaccgtgacgcgcaacaacctcgaggccgccgaggagatcgtccgccagctc
cggctgcgcgacatcggcgggatcatcgtcatcgacttcatcgacatggtgctcgagtcc
aaccgggacctcgtgcttcgccggctcgtcgagtgcctcggccgggaccggaccaagcac
caggtggccgaggtcacctcgctcgggctcgtgcagatgacccgcaagcgcgtcgggcag
ggcctcgtcgaggcgttctccgagacgtgcgagcactgcatggggcgcggcttcatcgtg
cacacggacccgatcgagaagcacggccacgtcgacgacggcctgcagggcggtcacccg
cagggcggccactcgcacggctcgtcctcgacgtccgacgactccgacggcccgtccaag
ggcggccgtcgcaagcgtggcggggccaaggagactctgaccggggctctcccgctccca
gtggccgtcccggtccttccgcaggcacgggcggccgtcaaggcgacgctcgcgacgatc
gccgccgcggccgcgcacgcgcacgacaccgcgctcgaggagcagaccggtcgctccggc
cccgccgacctgcccgtagggttcgactcggacgagggcctggagctgttcccggtcgcg
cccgaggtcttcgctgcgggttccgacggcgacgccggcacgcgcccggccagctcgcag
ggcgcggaatga
DBGET
integrated database retrieval system
