Pseudomonas sichuanensis: LOY51_02540
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Entry
LOY51_02540 CDS
T08582
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
psih
Pseudomonas sichuanensis
Pathway
psih03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
psih00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LOY51_02540 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psih03021
]
LOY51_02540 (rpoC)
03400 DNA repair and recombination proteins [BR:
psih03400
]
LOY51_02540 (rpoC)
Enzymes [BR:
psih01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LOY51_02540 (rpoC)
Transcription machinery [BR:
psih03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LOY51_02540 (rpoC)
DNA repair and recombination proteins [BR:
psih03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LOY51_02540 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
UVL89803
LinkDB
All DBs
Position
546002..550201
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG
EAALHAKIKVRINETVKERDGSVVKNTRIVDTTVGRALLFQVVPAGLPYDVVNQPMKKKA
ISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIGNATDE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVIDREGKEVEQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEIDCGTDQGLLMTPHIEGGDVVEPLGERVL
GRVIARDVFKPGTEDVIVPAGTLVDEQWVEFIELNSIDEVVVRSPISCETRYGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGMVRL
HNLKQVERADGNLVAVSRSGELAIADEFGRERERYKLPYGAVISVKEGDKVEAGAIVAKW
DPHTHPIVTELKGTVTFVGMEENITIKRQTDELTGLTNIEVLDVKDRPAAGKEIRPAIKM
VDANGKDLYLPGTDVPAQYFLPANALVGVADGAQIGVGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVITPTDGSDPYEELIPKWRHLNVFE
GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEIAESGDSSFIKGDQMELTHVLVENERLAAEDKFISKFTRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRRREADKPLR
VSASEVEAALTEALNSSGN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacctactgaatttgctgaaaaaccagggtcaagtcgaagagttcgacgccatc
cgtatcggtctggcgtcgcctgaaatgatccgttcgtggtcgttcggtgaagtcaaaaag
cccgagaccatcaactaccgtacgttcaagcctgagcgtgacggcctgttctgcgccaag
atctttggcccagtcaaggactacgagtgcctgtgcggcaagtacaagcgcctgaagcac
cgtggtgtgatctgcgagaagtgcggcgttgaagtcgccctggccaaggttcgccgtgag
cgcatggcgcacatcgagctggcctcgccggttgcccacatctggttcctgaagtcgctg
ccgtcccgtatcggcctgctgatggacatgaccctgcgtgacatcgagcgcgtgctctac
ttcgagagctacgtcgtgatcgacccgggcatgaccaccctcgagaagggtcagctgctc
aacgacgaacagtacttcgaagcgctggaagagttcggtgacgacttcgacgcccgcatg
ggtgccgaggctgtccgcgagctgctgcacgctatcgacctggagcacgagattggccgc
ctgcgcgaagaaattccgcaaaccaactcggaaaccaagatcaagaagctgtccaagcgc
ctgaagctgatggaagctttccagggctcgggcaacctgcctgagtggatggtcctgacc
gtcctgccagttctgccgccggacctgcgtccgctggtaccgctggatggcggccgcttc
gcgacctctgacctgaacgatctgtatcgtcgggtgatcaaccgtaacaaccgtctgaag
cgcctgctcgatctgtcggcgccggacatcatcgtgcgcaacgaaaagcgcatgctgcag
gaggcggtcgacgccctgctcgacaacggccgtcgcggtcgcgccatcactggctcgaac
aagcgtccgctgaagtcgctggccgacatgatcaaaggtaagcaaggtcgcttccgtcag
aacttgctcggtaagcgcgtggactactccggtcgttcggtaattaccgtaggcccgacc
ctgcgcctgcaccagtgcggtctgccgaagaagatggccctcgagctgttcaaaccgttc
attttcggcaagctggaaatgcgtggtctggcgaccaccatcaaggccgccaagaagatg
gtcgagcgcgagctgccagaggtgtgggacgttctcgccgaagtgattcgcgaacacccc
gtactgctcaaccgtgcaccgacccttcaccgtctgggtatccaggcctttgaaccggta
ctgatcgaaggtaaggcgattcagctgcacccgctggtctgcgccgcgtacaacgccgac
ttcgacggtgaccagatggccgttcacgtgccgctgacgctggaagcccagctcgaagcg
cgcgcgctgatgatgtcgaccaacaacattctgtcgccagccaacggtgagccaatcatc
gttccgtcgcaggacgttgtactgggtctgtactacatgacccgtgaagccatcaacgcc
aagggcgaaggtcgcgtattcgccgacctgcaggaagtcgaccgcgtattccgcgccggc
gaagctgccctgcacgcgaaaatcaaggttcgtatcaacgaaaccgtgaaagagcgtgat
ggttcggtagtcaagaacacccgcatcgtcgacaccaccgtcggccgtgcgctgctgttc
caggttgtaccggcaggcctgccgtacgacgtggtcaaccagccgatgaagaagaaggcg
atctccaagctgatcaaccagtgctaccgcgtggttggtctgaaagagaccgttatcttc
gctgaccagctgatgtacaccggtttcgcttactcgaccatttccggcgtttccatcggt
gttaacgacttcgttatcccggacgagaaagcccgcatcatcggtaacgctaccgatgaa
gtgaaggaaatcgagagccagtatgcctccggcctggtaacccagggcgagaagtacaac
aaggtcatcgacttgtggtcgaaggcgaacgacgaagtgtccaaggcgatgatggccaac
ctctcgaaagagaaggtcatcgaccgcgaaggcaaggaagtcgagcaagaatccttcaac
tcgatgtacatgatggctgactccggtgctcgtggttccgcggcccagatccgtcagctg
gccggtatgcgtggcctgatggccaagccggacggctcgatcatcgagacgccgatcacc
gcgaacttccgtgaaggtctgagcgtactgcagtacttcatctcgactcacggtgctcgt
aaaggtctggcggataccgcactgaagacagctaactccggttacctgactcgccgtctg
gtggacgttgcccaggatctggtcgtgaccgagatcgactgcggcaccgatcagggcctg
ctgatgaccccgcacatcgaaggcggcgacgttgtcgagccgctgggtgagcgcgtactg
ggtcgtgtcatcgcccgtgacgtgttcaagccaggtaccgaggacgtcatcgttcctgcc
ggcaccctggtcgacgagcagtgggtcgagttcatcgagctgaacagcatcgacgaagtg
gtcgtgcgttcgccgatcagctgcgaaacccgctacggcatctgcgccaagtgctacggt
cgcgacctggctcgcggtcaccaggtgaacatcggtgaagctgtcggcgttatcgctgca
cagtcgatcggtgagccgggtacccagctgaccatgcgtacgttccacatcggtggtgct
gcaagccgtacttcggctgccgacagcgtccaggtgaagaacggcggtatggtgcgtctg
cacaacctgaagcaggtcgagcgtgccgatggcaacctggttgccgtgtcgcgttccggc
gaactggccattgccgatgaattcggtcgtgagcgtgagcgctacaagctgccttacggt
gcggtaatttcggtcaaggaaggtgacaaggtcgaagctggcgccatcgtcgccaagtgg
gacccgcacacccacccgatcgttaccgagctgaaaggtaccgtgaccttcgtgggcatg
gaagaaaacatcaccatcaagcgccagaccgacgaactgaccggtctgaccaacattgaa
gtcctggacgtcaaggatcgccctgccgcaggcaaggaaatccgtccggccatcaagatg
gtcgatgccaatggcaaggatctgtacctgccaggtaccgacgtacctgctcagtacttc
ctgccagccaacgccctcgtcggtgtggctgacggtgctcagatcggcgtcggtgatgtt
attgcgcgtatcccgcaagaaacctcgaagacccgtgacatcaccggtggtctgccacgt
gttgccgacctgttcgaagcgcgtcgtccgaaagaagcctcgattctggctgaagtcagc
ggcaccattgccttcggtaaagagaccaagggcaagcgccgtctggtcatcaccccgacc
gatggcagcgatccgtacgaagagctgattccgaagtggcgccacctgaacgtcttcgaa
ggcgaacaggtaaaccgcggcgaagttatctccgacggcccgagcgatccgcacgacatc
ctgcgtctgctgggtgtcagcgcgctggcgaagtacatcgtcaacgagatccaggacgtt
taccgtctgcaaggcgttaagatcaacgacaagcacatcgagaccatcctgcgtcagatg
ctgcgcaaggtcgagatcgccgagtcgggcgactccagcttcatcaagggcgaccagatg
gaactgactcacgtgctggtcgagaacgagcgtctcgccgccgaagacaagttcatctcg
aagttcacccgtgtgctgctgggtatcaccaaggcctcgctgtcgaccgaatcgttcatc
tccgcggcttccttccaggaaaccacccgcgtactgaccgaagcggccgttaccggcaag
cgcgattacctgcgcggcctgaaagagaacgtggtcgtgggtcgtctgatcccggccggt
accggtctggcctatcacagcgagcgcaagcgccgccgtgaagccgacaagccgctgcgt
gtgagcgccagtgaggtggaagccgcactgaccgaagcgctgaactccagcggtaactaa
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