Pseudomonas sichuanensis: LOY51_03530
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Entry
LOY51_03530 CDS
T08582
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
psih
Pseudomonas sichuanensis
Pathway
psih03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psih00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LOY51_03530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psih03019
]
LOY51_03530
Enzymes [BR:
psih01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LOY51_03530
Messenger RNA biogenesis [BR:
psih03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LOY51_03530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UVL89993
LinkDB
All DBs
Position
755132..756463
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AA seq
443 aa
AA seq
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MNFAQLGLIEPLLRTLQTLDYSTPTPVQAKAIPAVLAGRDLMAAAQTGTGKTAGFALPVL
QGLALEGEKVASNSIRALVLVPTRELAEQVHANVREYAENLPLSTYAVYGGVSINPQMMR
LRRGVDLLVATPGRLLDLFRQNAIKFGQVQTLVLDEADRMLDLGFAEELRSVYAALPRKR
QTLLFSATFSEQIRLLAGLALNDPLSIEVSPRNAAATTVKQWLVPVDKKRKADLFCHLLR
KQRWSQVLVFAKTRNGVDQLVERLLAEGVNADGIHGDRPQATRQRALDSFKAREVQVLVA
TDVAARGLDIDDLPLVVNLDLPIVAEDYVHRIGRTGRAGNKGEAISLVCADEVQMLASIE
TLIRQQLPRHEEPDFIPDHRVPMIDASGQVVKKPKKPKKPKENSAKRGLGRWMDSDEGGA
AAPSVKAVRKVPSFNGGPRKRKP
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atgaatttcgcccaactcggcctgatcgaaccgctgctgcgcaccttgcagacgctggac
tacagcacacccaccccggtccaggccaaggccatccccgccgtgctcgctggccgcgac
ctgatggccgccgcccagaccggcaccggcaagaccgcaggctttgccctgccggtgctg
cagggcctggccctggaaggcgagaaggtcgccagcaactcgatccgcgcgctggtgctg
gtgcccacccgcgaactggccgagcaggtccacgccaacgtgcgcgaatatgccgagaac
ctgccgctgtccacctacgcggtatacggcggggtcagcatcaacccgcagatgatgcgc
ctgcgccgtggcgtcgacctgctggtggccacccccggccggttgctcgatctgttccgc
cagaacgccatcaagttcggccaggtgcagaccttggtactcgacgaagccgaccgcatg
ctcgacctgggctttgccgaagagctgcgctcggtgtacgccgcgctgccgcgcaagcgc
cagaccctgctgttctcggccaccttctccgagcagatccgcctgctcgccggccttgcg
ttgaacgacccgctgagcatcgaagtcagcccgcgcaacgccgccgccaccaccgtcaag
caatggctggtgccggtggacaagaagcgcaaggccgacctgttctgccacctgctgcgc
aagcagcgctggtcccaggtgctggtgttcgccaagacccgcaacggcgtggaccagctg
gtcgagcgcctgctcgccgaaggcgtcaacgccgatggcatccacggcgatcgcccgcag
gccacccgccagcgcgcgctggacagcttcaaggcccgtgaggtccaggtgctggtggcc
accgatgtcgccgcgcgcggcctggacatcgacgacctgccgctggtggtcaacctcgac
ctgccgatcgtggccgaagactacgtgcaccgcatcgggcgcaccggccgtgctggtaac
aagggtgaggcgatctcgctggtgtgcgctgacgaagtgcagatgctcgcgtcgatcgag
accttgattcgccagcagttgccacgccatgaagagccggatttcatccctgatcaccgg
gtgccgatgatcgatgccagtggccaggtggtgaagaaaccgaagaagcctaaaaagccg
aaagagaacagcgccaagcgcgggctggggcgttggatggacagcgacgagggcggggcc
gcggcgccgtcggtcaaggcggtgcgcaaggtgccgagctttaacggtgggccgcgcaag
cgtaagccataa
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