Pseudomonas sichuanensis: LOY51_09020
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Entry
LOY51_09020 CDS
T08582
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
psih
Pseudomonas sichuanensis
Brite
KEGG Orthology (KO) [BR:
psih00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psih03032
]
LOY51_09020 (topA)
03400 DNA repair and recombination proteins [BR:
psih03400
]
LOY51_09020 (topA)
Enzymes [BR:
psih01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
LOY51_09020 (topA)
DNA replication proteins [BR:
psih03032
]
Prokaryotic type
DNA Topoisomerases
LOY51_09020 (topA)
DNA repair and recombination proteins [BR:
psih03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
LOY51_09020 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
UVL91001
LinkDB
All DBs
Position
1937345..1939954
Genome browser
AA seq
869 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSASASKEPAAKRGKAAAEA
PALSPKEKARRTLVARMGVDPEAGWKAKYEILPGKEKVIEELRRLAKDADTIYLATDLDR
EGEAIAWHLREAIGGDDSRYKRVVFNEITKKAIQEAFSQPGELDIDRVNAQQARRFLDRV
VGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFNPEEYWEVHADLGTAKNAKV
RFEVAREKGEAFKPLNEAQAMAALEKLKASSYSVSKREDRPTSSKPSAPFITSTLQQAAS
NRLGYGVKKTMMMAQRLYEAGYITYMRTDSTNLSVDAVEMARSYIEKEFGKQYLPAAPIV
YGSKEGAQEAHEAIRPSDVNTHPTKLTGMERDAERLYELIWRQFLACQMPPAQYLSTSVT
VAAGDFELRAKGRILKFDGYTRVLPQQSKPGEDDVLPDMAQGEALKLIQIDPSQHFTKPP
ARFTEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVTLHNRRFYSEKMGDIVTERLSESF
SNLMDYGFTAGMEENLDDVAQGERDWKNVLDEFYGDFSKKLQTAESTEHGMRANQPTPTN
IECKECGRPMMIRTASTGVFLGCSGYSLPPKERCKATVNLVPGDEIAADDEGESESLVLR
GKHRCPICSTAMDAYLLDEKRKLHICGNNPDCVGYEIEEGSYRIKGYEGPSLECDKCGSE
MQLKTGRFGKFFGCTNATCKNTRKLLKSGEAAPPKMDKVDMPELKCEKVDDTYVLRDGAS
GLFLAASQFPKNRETRAPLVLEIVPHKHEIDPKYHFLCEAPQKDPEGRPAVIRYSRKTKE
QYVQSEVDGKPTGWKAFYDGKAWKVEDKR
NT seq
2610 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatcgctggtcattgtggaatccccggccaaggccaagaccatcaacaagtac
ctgggcaaccagtacgtggtgaagtcgagtatcggccatatccgcgaccttcccaccagc
ggttccgccagtgcgagcaaggagccggcggccaagcgtggcaaggccgcagctgaggct
ccggcactgtcgcccaaggaaaaggcccgccgcacgctggtggcacgcatgggcgtcgac
cctgaggccggctggaaagccaagtacgagatccttcccggcaaggagaaggtgatcgaa
gagctgcgccgcctggccaaggatgccgacaccatctatctcgcaaccgacttggatcgc
gagggggaagccattgcctggcacctgcgcgaagccatcggtggtgatgacagccgctac
aagcgtgtggtgttcaacgaaattaccaagaaagccatccaggaagcgttctcgcagccg
ggcgagctcgatatcgatcgggtcaatgcccagcaggcgcgtcgcttcctcgatcgcgtg
gttggttacatggtttcgccgttattgtgggccaagatcgcccgtggcctgtccgctggc
cgagtgcagtcggtggcggtgaagctggtcgtcgagcgtgagcgcgagatccgtgcgttc
aacccggaagagtactgggaagtccacgccgacctgggcaccgccaagaacgccaaggtg
cgcttcgaagtggcgcgcgagaagggcgaagccttcaagccgctcaacgaagcccaggcc
atggccgccctggagaaactcaaggcgtcgagctacagcgtcagcaagcgcgaagaccgg
ccgaccagcagcaagccctcggcaccgttcatcacctccaccctgcagcaagccgcgagc
aatcgcctgggctatggggtgaagaaaaccatgatgatggcccagcgtctgtatgaagcc
ggttacatcacttacatgcgtaccgactcgaccaacctgtcggtcgatgccgtggaaatg
gcgcgtagctacatcgagaaagagttcggcaagcagtacctgccggccgcgcccatcgtc
tatggcagcaaggaaggggcccaggaagcgcacgaggcgattcgcccgtccgacgtcaac
acccacccgaccaagctcaccggtatggagcgtgatgccgagcgcctgtacgaactgatc
tggcgccagttcctggcctgccagatgccgccggcgcagtatttgtccaccagcgttacc
gtggcggctggcgatttcgagctgcgcgccaagggccgcatcctcaagttcgacggttac
acccgcgtcttgccgcagcagagcaagccaggtgaagacgacgttctgccagacatggcg
cagggcgaagcgctcaagctgatccagatcgaccctagccagcacttcaccaagccgccg
gcgcgcttcaccgaagccagcctggtcaaggaaatggaaaagcgcggtatcggccgacca
tcgacctatgccgcgatcatttcgactatccaggatcgcggctatgtgaccctgcacaac
cgccgcttctactccgagaagatgggcgacatcgtcactgagcgcctgtcggagagtttc
tccaacctgatggactacggcttcaccgcgggcatggaagagaacctcgacgacgtagcc
cagggcgagcgtgactggaagaacgtgctggacgagttctacggtgacttcagcaagaag
ctgcagaccgccgagtctaccgagcatggcatgcgtgccaaccagccgaccccaaccaat
atcgagtgcaaggaatgtgggcggccaatgatgatccgcacggcctccaccggcgtattc
ctgggttgctcgggttatagcctgccacccaaagagcgttgcaaggccactgtgaacctg
gtgccgggcgacgagatcgctgccgacgacgaaggtgagtccgagtcgctggtattgcgt
ggcaagcatcgctgcccgatctgctcgaccgccatggacgcctacctgctcgacgagaag
cgcaagctgcacatctgcggtaacaacccagattgcgtcggctacgagatcgaagagggc
agctaccgcatcaagggttatgaagggccgagcctggaatgcgacaagtgcggcagcgag
atgcagctcaagaccggccgtttcggcaagttcttcggttgcaccaatgctacgtgcaaa
aacacccgcaagctgctcaaaagcggcgaggcggcgccaccgaagatggacaaggtggac
atgcccgagctcaagtgcgagaaggtcgacgacacctatgtgttgcgtgacggtgcctcg
ggtctgttcctggccgccagccagttccccaagaaccgcgaaacccgtgcgccgctggtg
ctggaaatcgtgccgcacaagcacgagatcgatccgaaataccacttcctctgcgaagcg
ccgcagaaggaccctgaaggccgcccggcggtgatccgctacagccgcaagaccaaggag
cagtacgttcagtctgaagtcgacggtaagccgactggctggaaggcgttctacgacggc
aaggcgtggaaggtcgaagacaagcgctga
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