Pseudomonas sichuanensis: LOY51_17080
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Entry
LOY51_17080 CDS
T08582
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
psih
Pseudomonas sichuanensis
Brite
KEGG Orthology (KO) [BR:
psih00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psih03032
]
LOY51_17080
03400 DNA repair and recombination proteins [BR:
psih03400
]
LOY51_17080
Enzymes [BR:
psih01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
LOY51_17080
DNA replication proteins [BR:
psih03032
]
Prokaryotic type
DNA Topoisomerases
LOY51_17080
DNA repair and recombination proteins [BR:
psih03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
LOY51_17080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
AFF4_CHD
Motif
Other DBs
NCBI-ProteinID:
UVL87493
LinkDB
All DBs
Position
3790986..3792005
Genome browser
AA seq
339 aa
AA seq
DB search
MPDCPPPAALHYVDDNQPGLSRRRRGERFLYFDALGRQVRDAATLARIAALVIPPAYTEV
WICADPLGHLQATGRDARGRKQYRYHQQWREQRDQYKYGRLLAFAEALPALRKRLDEHLA
RRGMDREKVMALVISLLDATLIRIGNRQYLRDNRSYGLTTLNCRHVKVRGSTIRFQFRGK
RGVEHDVTLQDRRLAALLKRCMELPGQALFQYLDEDGQRHSIGSTEVNQFLQQLTGADFT
AKDYRTWAGSSLALSLLRPLAWEPDSEARRQVAATVRQVANRLGNTPAVCRRCYIHPALF
EHFQLGRLAQLPRARRRKGLEPEEAALLVFLQALDANDH
NT seq
1020 nt
NT seq
+upstream
nt +downstream
nt
atgcccgactgcccgccacccgccgccctgcactatgtcgacgataaccagcccggattg
agccggcgccggcgaggcgaacgattcctctacttcgatgccttgggccggcaggtgcgc
gatgccgcgaccctggcgcgcatcgcggcgctggtgatcccgccagcttataccgaggtg
tggatctgcgccgacccgctgggccatttgcaggccaccggccgcgatgcccgggggcgt
aaacagtaccgctaccatcagcaatggcgagagcagcgtgaccagtacaagtacggccgc
ctgctggccttcgccgaagccctgcccgccttgcgcaagcggctggacgaacacctggcc
cgccgcgggatggaccgggaaaaagtgatggcgctggtgatcagcctgctcgacgcaacg
ctcattcgcatcggcaatcggcagtaccttcgcgacaatcgctcctacgggctgaccacg
ctgaactgccgtcacgtaaaggttcggggcagcaccatccgctttcagttccgcggcaag
cgcggtgtcgaacacgacgtcacgctgcaagaccgacgcctggcggcgctgctcaagcgc
tgcatggaactgcccggccaagcgctgttccagtacctggacgaagacgggcaacgccac
agcatcggttcgaccgaggtgaaccagttcctccagcagttgaccggcgccgacttcacc
gccaaggactaccgcacctgggccggcagcagcctggccctgagcctgctgaggccactg
gcctgggagcccgacagcgaagcccggcgccaggtggcggcaaccgtgcgccaggtggcc
aaccgcttgggcaataccccagccgtttgccgccgctgctatatccaccctgcgttgttc
gagcattttcagctcgggcgcctggcacagttgccgcgagcacgccggcgcaagggtctg
gagcccgaggaagcggcgctgctggtttttctgcaggcactggacgcaaacgatcattga
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