Pseudomonas sichuanensis: LOY51_20065
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Entry
LOY51_20065 CDS
T08582
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
psih
Pseudomonas sichuanensis
Brite
KEGG Orthology (KO) [BR:
psih00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psih03019
]
LOY51_20065 (hrpA)
Enzymes [BR:
psih01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
LOY51_20065 (hrpA)
Messenger RNA biogenesis [BR:
psih03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
LOY51_20065 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
AAA_25
NACHT
T2SSE
ResIII
ABC_tran
AAA_30
SRP54
AAA_23
Motif
Other DBs
NCBI-ProteinID:
UVL88055
LinkDB
All DBs
Position
complement(4448736..4452641)
Genome browser
AA seq
1301 aa
AA seq
DB search
MTDHAIDQLLNNLDHAMIADRHRLRRQLHELRKRPDEAKLAQWVEKVQASFAQVTARQQS
VPSIRYDDSLPIAAKRDEIKKALAEHQVLVIAGETGSGKTTQLPKICLELGRGSHGLIAH
TQPRRIAARSVAARVAEELGTPLGALVGYQVRFEDQSDSNTLVKLMTDGILLAETQHDRF
LERYDTIIVDEAHERSLNIDFLLGYLKTLLHRRPELKLIITSATIDLERFSKHFDGAPII
EVSGRTYPVDTWYRPLTSEQDEEGNQIEDDLSVDQAILATLDEIAQHERSQGKGPGDVLV
FLPGEREIRDAAEILRKAQLRHTEILPLYARLSPAEQQRIFQSHSGRRVVLATNVAETSL
TVPGIRYVIDSGTARISRYSYRAKVQRLPIEAVSQASANQRKGRCGRVEPGICIRLYSEE
DFNGRPAFTDPEILRTNLAAVILQMLHLRLGAIDAFPFIEPPDGKAISDGFNLLQELSAV
NRENQLTPLGRQLARLPIDPRLGRMLLEGARLGSLQEVLIVASALSVQDPRERPPERQQA
ADQAHAQWKDVDSDFAALVNLWRGFEEQRQALTANPLRNWCRKNFLNYLRLREWRDAHRQ
LALICRDLQLTVNKDPCDYPRMHKAILSGLLSQIGHKAEEGDYQGARQRRFWIHPSSGIG
RKRPQWVMAAELVETTKLYARMVAKIEPDWIEPLATHLIKKNHFEPHWEKKRGQVVAYEQ
ITLYGLIVVGRRPVHFGPIDPVTSRELFIREGLVGGEIQSRAKCLAANKRLLEQLDELEA
KARRRDILADEETLYAFYEARLPQEIHQTATFDAWYRMTSQKDANLLIMREEDVLAREAS
EVTAAQYPDHLQVGDLRLSLSYHFEPNHPRDGVTVRVPAPLLPNLPGERLEWLVPGLLEA
KCIALVRNLPKALRKNFVPVPDFVKAALSRMTFGQGGLPQALGQELLRMTGARVSDEAWA
EAAGLVEGHLRMNIEVVDAAGKFLGEGRDLAELTARFAAASQAALALPRNEKAEQPVQAK
AFTQVAQTAQQKIAGLSMTVYPALVEDNGTVREGRFSTQAEAEFQHRRALQRLLLQQLAE
PAKFLRGKLPGLTELGLLYRELGRVEALVEDILLASLDSCILEGEDPLPRDGAGLASLAE
RKRGSWTEHAERLARLTLDVLKLWHGLQKRFKGKIDLSQAVALNDIKQQLANLVYPGFVR
ETPGVWLKELPRYLKAVELRLEKLGSQVQKDRVWSGELANCWAQYKARADKHAQEGKRDE
QLLMYRWLLEEYRVSLFAQQLGTKVPVSDKRLSKQWSQVEA
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
atgacagaccacgccatcgaccaactgctgaacaacctcgaccacgccatgatcgccgac
cgccatcgcctgcggcggcaactgcatgagctgcgcaagcgcccagacgaggccaagctt
gcgcagtgggtggagaaggtccaggcctcctttgcccaggtcaccgcgcgccagcagagc
gtgccgagcatccgttacgacgacagcctgccgattgcggccaagcgtgacgagatcaag
aaggccctggccgaacaccaggtgctggtgatcgccggcgagaccggttcgggcaagacc
acccagttgccgaagatctgcctggagctgggacgcggcagccatggcctgatcgcccac
acccagccccggcggatcgccgcgcgcagcgtggcggcgcgggtcgccgaagaactcggc
acgccgctgggcgcgctggtcggttaccaggtgcgtttcgaggaccagagcgattcgaac
accttggtcaaactgatgaccgacggcatcctgctggccgagacccagcacgaccgcttc
ctcgagcgctacgacacgatcatcgtcgacgaggcccacgagcgcagcctgaacatcgat
ttcctgctgggctacctcaagaccctgctgcaccgtcgcccggagctgaagctgatcatc
acctcggcgaccatcgacctggagcgcttctccaagcacttcgacggcgcgccgatcatc
gaggtttccgggcgcacgtacccggtggatacctggtatcgcccgttgaccagcgagcag
gacgaggagggcaaccagatcgaggacgatctctcggtcgaccaggcgatcctcgccaca
ctcgacgagattgcccagcacgaacgcagccagggcaagggcccgggcgatgtgctggtg
ttcctgcccggcgagcgcgaaatccgcgatgccgccgagattctgcgcaaggcgcaactg
cgccataccgagatcctgccgctgtatgcacgcctgtcgccggccgagcaacagcggatc
ttccagtcccacagcggccgccgtgtggtgttggcgaccaacgtcgccgaaacctcgctg
acggtgccgggcatccgctatgtcatcgacagcggcaccgcgcgcatcagccgctacagc
taccgcgccaaggtccagcgcctgcccatcgaggcggtgtcccaggccagcgccaaccag
cgtaaaggccgctgcggccgggtcgagccgggtatctgcatccgcctgtacagcgaagag
gacttcaacggccggccggcgttcaccgacccggagatcctgcgtaccaacttggcggcg
gtgatcctgcagatgctgcacctgcgcctgggtgccatcgacgcgttcccgttcatcgag
ccaccggatggcaaggccatcagcgacggtttcaacctgctgcaggagctgtcggcggtc
aatcgcgagaaccagctcacgccgctgggccgccaactggcgcgcttgccgatcgacccg
cggctgggccgcatgctgcttgaaggcgcacgcctgggcagcctgcaagaggtgttgatc
gttgccagtgcgttgtcggtgcaggacccgcgcgagcgcccgccggagcgccagcaggcg
gccgaccaggcccatgcccagtggaaggacgtcgactccgacttcgccgccctggtcaac
ctgtggcgcggtttcgaggaacagcgccaggcgctgaccgccaacccgctgcgtaactgg
tgccggaagaacttcctcaactacctgcgtttgcgcgagtggcgcgatgcccatcgtcaa
ctggcgctgatctgccgcgacctgcagcttacggtgaacaaagacccgtgcgattacccg
cgcatgcacaaggcgatcctcagcggcctgctcagccagatcggccacaaggccgaagag
ggcgactatcagggcgcgcgtcagcgccgcttctggattcatccctcgtccggcatcggc
cgcaagcgcccgcaatgggtgatggccgccgaactggtggaaaccaccaagctgtatgcg
cgcatggtggccaagatcgagccggactggatcgaaccgctggccacccacctgatcaag
aagaatcacttcgagcctcattgggagaagaagcgcgggcaggtggtggcttacgagcag
atcaccctgtacgggctgatcgtggtcggccgccggccggtgcacttcggcccgatcgac
ccggtcacgtcacgggagctgttcatccgcgaggggctggtcggcggcgagatccagtcg
cgggccaagtgcctggcggccaacaaacgcctgctcgagcagctcgacgagctggaagcc
aaggcacgccggcgcgacatccttgccgatgaagagacgctgtacgccttctacgaggcg
cgcctgccgcaagagattcaccagaccgcgaccttcgacgcctggtaccggatgaccagc
cagaaggatgccaacctgctgatcatgcgcgaggaagatgtgctggcccgcgaggccagc
gaggtgaccgccgcgcagtacccggaccacctgcaggtgggcgacctgcgcctgtcgctg
agctatcacttcgagcccaaccacccgcgcgatggtgtcaccgtgcgggtgccggcgcca
ctgctgccgaacctgccgggcgaacgtctggaatggctggtgccggggctgctggaggcc
aagtgcattgccctggtgcgcaacctgcccaaggccttgcgcaagaacttcgtgccggtg
ccggacttcgtcaaggcggcgctttcgcgcatgaccttcggccagggcggcctgccgcag
gccctggggcaggaactgctgcgcatgaccggggcacgggtgtccgatgaagcctgggcg
gaagccgccgggctggtggaaggccacctgcgcatgaacatcgaagtggtcgacgccgca
ggcaagttcctcggtgagggccgtgacctggccgagctgaccgcgcgcttcgccgccgcc
agccaggcggcgctggccctgccgcgcaacgagaaggccgagcagccggtgcaggccaag
gccttcacccaggtggcgcagaccgcccagcagaagatcgccgggctgtcgatgaccgtc
tacccggcgctggtcgaggacaacggcaccgtgcgcgaggggcgtttctccacccaggcc
gaagccgagttccagcaccgccgcgcactgcagcgcctgttgctgcagcagctggccgag
ccggccaagttcctgcgcggcaagctgccggggctgactgaactgggcttgctgtaccgc
gagctggggcgggtcgaggcgttggtcgaggacatcctgctggccagcctcgacagttgc
atcctcgaaggcgaagaccctttgccccgcgacggtgccggcctggcgtcactggccgag
cgcaagcgcggcagctggaccgagcatgccgaacgcctggcgcgcctgacccttgacgtg
ctgaagctgtggcatggcctgcagaagcgcttcaagggcaagatcgacctgagccaggca
gtggcgctgaacgacatcaagcagcaactggccaacctggtctacccaggcttcgtgcgt
gagacgccgggcgtctggctcaaggaactgccacgttatctcaaggcggtggaactgcgc
ctggagaagctggggtcgcaggtgcagaaggatcgggtgtggagtggcgaactggccaat
tgctgggcccagtacaaggcccgtgccgacaagcatgcccaggagggcaagcgtgacgag
cagttgctgatgtaccgctggctgctggaggagtaccgggtgtcgttgttcgcccagcag
ttgggaacaaaagtgccggtttccgacaagcgactgagcaagcagtggagtcaggtggaa
gcctaa
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