Pseudomonas sichuanensis: LOY51_20850
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Entry
LOY51_20850 CDS
T08582
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
psih
Pseudomonas sichuanensis
Pathway
psih03030
DNA replication
psih03430
Mismatch repair
psih03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psih00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LOY51_20850 (dnaE)
03430 Mismatch repair
LOY51_20850 (dnaE)
03440 Homologous recombination
LOY51_20850 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psih03032
]
LOY51_20850 (dnaE)
03400 DNA repair and recombination proteins [BR:
psih03400
]
LOY51_20850 (dnaE)
Enzymes [BR:
psih01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LOY51_20850 (dnaE)
DNA replication proteins [BR:
psih03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LOY51_20850 (dnaE)
DNA repair and recombination proteins [BR:
psih03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LOY51_20850 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
tRNA_anti_2
HHH_3
HROB
Motif
Other DBs
NCBI-ProteinID:
UVL88192
LinkDB
All DBs
Position
complement(4607648..4611172)
Genome browser
AA seq
1174 aa
AA seq
DB search
MSVSFIHLRVHSEFSLVDGLVRIKPLAKALAGMNMPAVAITDQSNMCSLVKFYKTAMGAG
IKPICGADLWLAGSDPEAPLSRICFLAMNPQGYRNLTELISRGWTDGQRNGLVIIQREWI
APASEGLIALSAGKEGDIGAALMAGREHEAEALLGDWMGMFPERFYVEVQRTNRAGDEEY
VHAAVALADKLGAPLVATNDVRFIKQSDFDAHETRVCIGEGWTLDDPRRPRGYSDQQYLK
SAEEMAELFSDLPDAIANTVEIAKRCNITVQLGKYFLPDFPTPNGMGIDDYLRHVSHEGL
EERLAVLWPKETTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIVMDFIKWAKNNDVPV
GPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDFCMDGRDRVIDYV
AEAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQE
EILRDFLKSDEDGREIWDMALKLEGVTRGTGKHAGGVVIAPTKLTDFSPIACDEEGGGLV
TQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQKKNNLPDVNIDFIPLDDRKTYE
LLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGR
AELAYPHADYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPE
EMAKQRGGFIEGCVGNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKTHY
PAPFMAAVLSADMHNTDKVVVLVEEVRSMKLRLDAPDVNFSDFKFAVNDHGRIVYGLGAI
KGVGEGPVEAIVEARAQGGPFKDLFDFCERIDLKRVNKRTLDALIRSGALDRLGPHFHDE
IKAYQANIDINRATLLSALGEAVKAAEQAAHTADSGHVDLFGSMFDEADVDVYANHRKVR
ELTLKERLKGEKDTLGLYLTGHPIDEYEAEIRRFARQRIIDLKPARDTQTIAGMIIALRV
MKNKKGDKMGFVTLDDRSGRIEASLFADAFMAAQALLQTDAMVVVEGEVSNDDFSGGLRL
RVKTVMTMEDARTKLAESLRLKVAHEALKGDRLKWLGELITRHRGGCPITLEYTGSDAKA
MLQFGDQWCIDPADGLIQALRDQFGRENVFLQYR
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtcggtctccttcattcaccttcgcgtgcattccgaattctccctggtcgacggcctg
gtgcggatcaagccgctggccaaggccttggccgggatgaacatgccggcggtggcgatc
accgaccagagcaacatgtgctcgctggtgaagttctacaagaccgccatgggcgccggt
atcaagcccatctgcggcgcagacctgtggctggcgggcagcgatcccgaggcgccactg
tcgcggatctgtttcctggctatgaacccccagggctaccgcaacctcaccgagctgatc
tccaggggttggaccgacggccagcgcaatggcctggtgatcatccagcgcgaatggatc
gccccggccagcgagggcctgatcgccctgtccgctggcaaggaaggcgatatcggcgcg
gcgttgatggcgggccgcgagcatgaggccgaggccttgctcggcgactggatgggcatg
ttcccggagcgcttctacgtcgaggtgcagcgtaccaaccgtgccggtgacgaagagtat
gtgcacgccgccgtggccctggccgacaagctcggcgcgccgctggtggcgaccaacgac
gtgcgcttcatcaagcagtcggacttcgacgcccacgaaacccgggtctgcatcggcgaa
ggctggaccctcgacgatccccgtcggccacgtggctacagcgaccagcagtacctcaag
tccgccgaagagatggccgagctgttcagcgacctgcctgacgccatcgccaacaccgtg
gagatcgccaaacgctgcaacatcaccgtgcagctgggcaagtacttcctgcccgacttc
cccacgcccaacggcatgggcatcgacgactacctgcgccatgtctcccacgaaggcctg
gaagagcgcctggcggtactttggccgaaggagaccacgcccaactacgaagagaagcgc
caggtctacctggaccgtctgaagttcgaactggacatcatcatccagatgggcttcccc
ggttacttcctgatcgttatggacttcatcaagtgggccaagaacaacgacgtgccggtc
ggcccgggccggggctcgggtgccggctcgctggtggcctatgtactgaagatcaccgac
ctcgacccgctggcctacgacctgctgttcgagcgtttcctcaaccctgaacgtatttcc
atgcccgacttcgacgtcgacttctgcatggatggccgcgaccgggtgatcgactacgtg
gccgaggcctatggccgcaatgcggtcagccagatcatcactttcggcaccatggccgcc
aaggcggtggtgcgtgacgtggcgcgggtgcagggcaagtcgtacggtttggccgaccgg
ctgtcgaagatgatcccgttcgaagtgggcatgaccctggagaaggcctacgagcaggaa
gaaatcctgcgcgacttcctcaagagcgacgaggatggccgcgagatctgggacatggcc
ctcaagctcgagggtgtcacccgcggtaccggcaagcacgccggtggtgtggtgatcgcg
cccaccaagctcaccgacttctcgccgatcgcctgtgacgaagagggcggcggcctggtg
acccagttcgacaaggacgacgtcgaggccgcgggcctggtgaagttcgacttcctcggc
ctgcgcacgctgaccatcatcaaatgggcgatggagatcatcaatcgcgagcagaaaaag
aacaatctgcccgacgtgaacatcgacttcatcccgctggatgaccgcaagacctacgag
ctgctgcagaaggccgagaccactgcagtgttccagcttgaatcgcgcggcatgaaagag
ctgatcaagaagctcaagcccgactgcctggaagacttgatcgcactggtggcgttgttc
cgtcccggcccgctgcagtcgggcatggtggacgacttcatcaaccgcaagcacggccgc
gccgagctggcctacccgcacgccgactaccagtacgaaggcctcaagccggtactggcg
cccacctacggcatcatcctgtaccaggaacaggtgatgcagattgcccaggtgatggcc
ggctacaccctcggtggcgccgacatgctgcgccgggcgatgggtaagaaaaagcccgag
gagatggccaagcagcgcggtggtttcatcgagggttgcgttggcaacaacatcgatgcg
gacctggccggtaacatcttcgatctggtagaaaaattcgccggttacggcttcaacaag
tcccactccgcagcctatggcctggtttcctaccagactgcctggctgaagacccactac
ccggcgccgttcatggccgcggtactgtcggcggacatgcacaacaccgacaaggtggtg
gtgctggtcgaggaagtgcgcagcatgaagctgcggctcgatgcgccggacgtgaacttc
tccgacttcaagttcgccgtcaacgaccatggccgcatcgtctatggcctgggggcgatc
aagggcgtgggtgaggggccggtggaggcgattgtcgaggcgcgggcgcaaggtggcccg
ttcaaggacctgttcgacttctgtgaacgcatcgacctcaaaagggtcaacaagcgtacc
ctcgacgcgctgatccgcagcggtgcgctggaccgcctgggcccgcacttccatgacgag
atcaaggcctaccaggccaacatcgacatcaatcgcgccaccttgctgtcggcgctgggc
gaggccgtcaaggctgccgagcaggcggcgcataccgccgacagtggtcacgtcgacctg
ttcggcagcatgttcgacgaggcggatgtcgacgtctacgccaaccaccgcaaggtgcgc
gaactgacgctcaaggagcgcctcaagggcgaaaaggacaccctcgggctgtatctcacc
ggccacccgatcgacgagtacgaggccgagatccgccgcttcgcccgccagcgcatcatc
gacctcaagccggcgcgtgacacccagaccattgctggaatgatcattgccctgcgggtg
atgaagaacaagaagggcgacaagatgggcttcgtgaccctggacgaccgctccgggcgt
atcgaagcctcgttgttcgccgacgccttcatggccgcgcaagcgttgctgcagaccgac
gccatggtggtggtggaaggggaggtcagcaacgatgacttctccggcggcctgcgcctg
cgggtcaagacggtgatgaccatggaggatgcacgcaccaaactggccgagagcctgcgc
ctgaaagtcgcccatgaggcgctcaagggcgatcggctgaagtggctgggcgagctgatc
acccgtcatcgcgggggctgcccgatcaccctggagtacaccggcagcgacgccaaggcc
atgctgcagttcggcgaccagtggtgcatcgacccggccgatgggttgattcaggcactg
cgtgaccagttcgggcgtgagaacgtcttcctgcaatatcgttga
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