KEGG   Pseudomonas siliginis: NF676_00860
Entry
NF676_00860       CDS       T08569                                 
Symbol
polA
Name
(GenBank) DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
psii  Pseudomonas siliginis
Pathway
psii03030  DNA replication
psii03410  Base excision repair
psii03420  Nucleotide excision repair
psii03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:psii00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    NF676_00860 (polA)
   03410 Base excision repair
    NF676_00860 (polA)
   03420 Nucleotide excision repair
    NF676_00860 (polA)
   03440 Homologous recombination
    NF676_00860 (polA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:psii03032]
    NF676_00860 (polA)
   03400 DNA repair and recombination proteins [BR:psii03400]
    NF676_00860 (polA)
Enzymes [BR:psii01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     NF676_00860 (polA)
DNA replication proteins [BR:psii03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     NF676_00860 (polA)
DNA repair and recombination proteins [BR:psii03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     NF676_00860 (polA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     NF676_00860 (polA)
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N DNA_pol_A_exo1 5_3_exonuc DNA_polI_exo1
Other DBs
NCBI-ProteinID: UST79903
LinkDB
Position
complement(60767..63571)
AA seq 934 aa
MSQAPLVLVDGSSYLYRAFHALPPLTTSKGLPTGAVKGVLNMLKSLRKQYPDSPFAVVFD
AKGGTFRDEMYAEYKANRPSMPDDMRVQIEPLHQSVIALGFPLLCVDGVEADDVIGTLAR
SSAAADRPVIISTGDKDMAQLVDGHITLVNTMSGSSMDVEGVKEKFGVAPEQIIDYLALM
GDSSDNIPGVPGIGPKTASGLLVGVNGGLTELYANLDIVPTLPIRGAKTLPAKLEEHREM
AFLSYQLATIKVDVPLDIGLDDLQMGQEDPAKLYELYTLLEFKSWLNDLDRDAKRLELSA
AAEPAPAHDLFSAPQAEAPVAPAEAAYETILDQARFDVWLEKLRNAKLIAFDTETTGIDA
QRAQLVGLSFAVQANEAAYIPLTHSYIGVPEQLDRDTVLRALKPILEDPSKLKVGQHAKF
DMNILANCAIGGDQSEGISVRGIAFDTMLESYVLNSTATRHDMDSLAQKYLDHTTVSFQD
IAGKGAKQLTFDQIALEQAGPYAAEDADITLRLHQILFDKLSAIPSLASVLTDIEIPLVP
VLARIERQGAFVDAELLGIQSIELGNKMVALEREAFEIAGEEFNLGSPKQLGVILYEKLG
LPVLKKTAKGQPSTAEEVLAKLAEDDHRLPKVLMEHRSMSKLKSTYTDRLPEQINPRTGR
IHTSYHQAVASTGRLSSSDPNLQNIPVRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIM
AHLSRDEGLMNAFRNNLDVHTATAAEVFKVELDQVTSDQRRSAKAINFGLIYGMGAQKLG
KDIGVDTKTAKAYIDTYFARYPGVREYMERTRAQAADQGYVETFFGRRLYLPEINSNKPQ
ERAAAERTAINAPMQGTAADIIKKAMVAVDNWLATSGLDARVILQVHDELVLEVREDLVE
QVSAEIRTHMSEAAKLDVPLLVEVGVGNNWDEAH
NT seq 2805 nt   +upstreamnt  +downstreamnt
atgagccaagcccccctcgtcctggtggacggttcgtcttacctgtaccgcgcctttcat
gcactgccaccactgaccacgtccaaaggcctgccgaccggtgcggtcaaaggcgtgctg
aacatgctcaagagtctgcgcaagcagtacccggacagccccttcgccgtggtgttcgac
gccaagggcggaacatttcgtgacgagatgtacgccgaatacaaggccaaccggccgagc
atgcccgatgacatgcgcgtgcagatcgagccgctgcaccagagcgtgatcgccctcggc
ttcccgctgctgtgcgtcgacggcgtcgaggctgacgacgtgatcggcaccctcgcccgc
agcagtgcggcggccgatcgcccggtgatcatttccaccggtgacaaggacatggcgcaa
ctggtcgacggccacattaccttggtcaacaccatgtccggtagctcgatggatgtggaa
ggcgtgaaggagaaatttggcgtcgcaccggagcagatcatcgattatctggcactgatg
ggcgattcctccgacaacattccgggcgtgccgggcatcggcccgaagacggcgtccggc
ctgttggtcggcgtcaacggcggtctgaccgagctgtacgccaacctcgacatcgtgccg
accctgccgatccgtggcgcaaaaaccttgccggccaagctcgaagagcatcgggaaatg
gctttcctgtcctatcaactggcgaccatcaaggtcgacgtgccgctggatatcggcctc
gatgatctgcagatgggccaggaagatccggccaaactctacgagctgtacaccctgctg
gaattcaagagctggctcaatgatctggatcgcgatgccaagcgtctggaactgagtgcg
gcggccgaacctgcgcccgcccatgatctgttcagcgccccgcaagccgaggcacctgtt
gcccctgccgaggccgcgtacgaaaccatcctcgatcaggctcgcttcgacgtctggctg
gaaaaactgcgcaacgccaaactgatcgccttcgacactgagaccaccggcatcgacgcg
cagcgagcgcaactggtcggtctgtcgttcgccgtacaggccaacgaagctgcgtacatc
ccgctgacccactcctacatcggcgtgccggagcagctggatcgcgacaccgtgctgcgg
gcactcaagccgattctggaagacccgagcaaactcaaggttggccagcacgccaagttc
gacatgaacattctggccaactgcgccattggcggcgatcagagtgaaggcatcagcgtg
cgcggcatcgccttcgacaccatgctcgagtcctacgtactcaattccaccgcgacccgt
cacgacatggacagcctcgcgcagaagtaccttgaccacaccacggtgagcttccaggac
atcgcaggcaaaggtgccaagcaactgaccttcgaccagatcgctctggaacaggccggg
ccgtatgccgccgaagacgccgacatcactctgcgcctgcaccagatcctgttcgacaag
ctcagcgcgattccgagcctggccagcgtcttgaccgacatcgaaatcccactggtaccg
gtattggcgcgcatcgaacgccagggcgcgttcgtcgatgccgaactgctcggcattcag
agcattgagctgggcaacaaaatggtcgcgctggagcgtgaagccttcgaaattgccgga
gaggaattcaacctcggctcgccgaagcagctgggcgtgattctctatgaaaagctcggc
ctgccggtgctgaagaaaaccgccaagggccagccgtccaccgctgaagaagtgctggcg
aaactcgccgaagacgatcaccgcttgccgaaggtgctgatggagcaccgttcgatgagc
aagctgaaaagcacctacaccgatcgcctgcccgaacagatcaacccgcgcaccgggcgc
atccacacctcgtatcatcaggccgtggcttcgaccgggcgcctgtcttccagtgatccg
aacctgcagaacattccggtgcgcaccgccgaaggccgacgcattcgtcaggcgttcgtc
gcaccgaagggttacaaactgctggcggcggactattcgcagatcgaactgcggatcatg
gcccacctgtcccgcgacgaaggcctgatgaacgcctttcgcaacaatctcgacgtgcac
actgcaaccgctgccgaagtattcaaggtcgagcttgatcaagtgacctcggaccagcgc
cgcagcgccaaggcgatcaacttcggtctgatctacggcatgggcgcgcagaagctcggc
aaggacatcggcgtcgacaccaagaccgccaaggcttacatcgacacctacttcgcccgt
tatccaggcgtgcgcgaatacatggagcgtacccgcgcgcaagcggcggatcagggttac
gtcgaaactttcttcggtcgtcgcctgtacttgccggagatcaactcgaacaagccgcag
gaacgcgccgctgcagaacgcacagcgatcaacgcgccgatgcagggcacggcagcggac
atcatcaagaaagcgatggtggctgtggataactggctggccacgtcggggctggatgcc
cgggtcatcctgcaagtgcacgacgaactggtgctggaggttcgcgaggatctggtcgag
caggtcagtgccgaaattcgtacgcacatgagcgaagcggcgaaactggatgtgccgctg
ctggtggaagttggcgtgggcaacaactgggatgaggcgcactga

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