Pseudomonas siliginis: NF676_00860
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Entry
NF676_00860 CDS
T08569
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
psii
Pseudomonas siliginis
Pathway
psii03030
DNA replication
psii03410
Base excision repair
psii03420
Nucleotide excision repair
psii03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psii00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NF676_00860 (polA)
03410 Base excision repair
NF676_00860 (polA)
03420 Nucleotide excision repair
NF676_00860 (polA)
03440 Homologous recombination
NF676_00860 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psii03032
]
NF676_00860 (polA)
03400 DNA repair and recombination proteins [BR:
psii03400
]
NF676_00860 (polA)
Enzymes [BR:
psii01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NF676_00860 (polA)
DNA replication proteins [BR:
psii03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NF676_00860 (polA)
DNA repair and recombination proteins [BR:
psii03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
NF676_00860 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NF676_00860 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
Motif
Other DBs
NCBI-ProteinID:
UST79903
LinkDB
All DBs
Position
complement(60767..63571)
Genome browser
AA seq
934 aa
AA seq
DB search
MSQAPLVLVDGSSYLYRAFHALPPLTTSKGLPTGAVKGVLNMLKSLRKQYPDSPFAVVFD
AKGGTFRDEMYAEYKANRPSMPDDMRVQIEPLHQSVIALGFPLLCVDGVEADDVIGTLAR
SSAAADRPVIISTGDKDMAQLVDGHITLVNTMSGSSMDVEGVKEKFGVAPEQIIDYLALM
GDSSDNIPGVPGIGPKTASGLLVGVNGGLTELYANLDIVPTLPIRGAKTLPAKLEEHREM
AFLSYQLATIKVDVPLDIGLDDLQMGQEDPAKLYELYTLLEFKSWLNDLDRDAKRLELSA
AAEPAPAHDLFSAPQAEAPVAPAEAAYETILDQARFDVWLEKLRNAKLIAFDTETTGIDA
QRAQLVGLSFAVQANEAAYIPLTHSYIGVPEQLDRDTVLRALKPILEDPSKLKVGQHAKF
DMNILANCAIGGDQSEGISVRGIAFDTMLESYVLNSTATRHDMDSLAQKYLDHTTVSFQD
IAGKGAKQLTFDQIALEQAGPYAAEDADITLRLHQILFDKLSAIPSLASVLTDIEIPLVP
VLARIERQGAFVDAELLGIQSIELGNKMVALEREAFEIAGEEFNLGSPKQLGVILYEKLG
LPVLKKTAKGQPSTAEEVLAKLAEDDHRLPKVLMEHRSMSKLKSTYTDRLPEQINPRTGR
IHTSYHQAVASTGRLSSSDPNLQNIPVRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIM
AHLSRDEGLMNAFRNNLDVHTATAAEVFKVELDQVTSDQRRSAKAINFGLIYGMGAQKLG
KDIGVDTKTAKAYIDTYFARYPGVREYMERTRAQAADQGYVETFFGRRLYLPEINSNKPQ
ERAAAERTAINAPMQGTAADIIKKAMVAVDNWLATSGLDARVILQVHDELVLEVREDLVE
QVSAEIRTHMSEAAKLDVPLLVEVGVGNNWDEAH
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atgagccaagcccccctcgtcctggtggacggttcgtcttacctgtaccgcgcctttcat
gcactgccaccactgaccacgtccaaaggcctgccgaccggtgcggtcaaaggcgtgctg
aacatgctcaagagtctgcgcaagcagtacccggacagccccttcgccgtggtgttcgac
gccaagggcggaacatttcgtgacgagatgtacgccgaatacaaggccaaccggccgagc
atgcccgatgacatgcgcgtgcagatcgagccgctgcaccagagcgtgatcgccctcggc
ttcccgctgctgtgcgtcgacggcgtcgaggctgacgacgtgatcggcaccctcgcccgc
agcagtgcggcggccgatcgcccggtgatcatttccaccggtgacaaggacatggcgcaa
ctggtcgacggccacattaccttggtcaacaccatgtccggtagctcgatggatgtggaa
ggcgtgaaggagaaatttggcgtcgcaccggagcagatcatcgattatctggcactgatg
ggcgattcctccgacaacattccgggcgtgccgggcatcggcccgaagacggcgtccggc
ctgttggtcggcgtcaacggcggtctgaccgagctgtacgccaacctcgacatcgtgccg
accctgccgatccgtggcgcaaaaaccttgccggccaagctcgaagagcatcgggaaatg
gctttcctgtcctatcaactggcgaccatcaaggtcgacgtgccgctggatatcggcctc
gatgatctgcagatgggccaggaagatccggccaaactctacgagctgtacaccctgctg
gaattcaagagctggctcaatgatctggatcgcgatgccaagcgtctggaactgagtgcg
gcggccgaacctgcgcccgcccatgatctgttcagcgccccgcaagccgaggcacctgtt
gcccctgccgaggccgcgtacgaaaccatcctcgatcaggctcgcttcgacgtctggctg
gaaaaactgcgcaacgccaaactgatcgccttcgacactgagaccaccggcatcgacgcg
cagcgagcgcaactggtcggtctgtcgttcgccgtacaggccaacgaagctgcgtacatc
ccgctgacccactcctacatcggcgtgccggagcagctggatcgcgacaccgtgctgcgg
gcactcaagccgattctggaagacccgagcaaactcaaggttggccagcacgccaagttc
gacatgaacattctggccaactgcgccattggcggcgatcagagtgaaggcatcagcgtg
cgcggcatcgccttcgacaccatgctcgagtcctacgtactcaattccaccgcgacccgt
cacgacatggacagcctcgcgcagaagtaccttgaccacaccacggtgagcttccaggac
atcgcaggcaaaggtgccaagcaactgaccttcgaccagatcgctctggaacaggccggg
ccgtatgccgccgaagacgccgacatcactctgcgcctgcaccagatcctgttcgacaag
ctcagcgcgattccgagcctggccagcgtcttgaccgacatcgaaatcccactggtaccg
gtattggcgcgcatcgaacgccagggcgcgttcgtcgatgccgaactgctcggcattcag
agcattgagctgggcaacaaaatggtcgcgctggagcgtgaagccttcgaaattgccgga
gaggaattcaacctcggctcgccgaagcagctgggcgtgattctctatgaaaagctcggc
ctgccggtgctgaagaaaaccgccaagggccagccgtccaccgctgaagaagtgctggcg
aaactcgccgaagacgatcaccgcttgccgaaggtgctgatggagcaccgttcgatgagc
aagctgaaaagcacctacaccgatcgcctgcccgaacagatcaacccgcgcaccgggcgc
atccacacctcgtatcatcaggccgtggcttcgaccgggcgcctgtcttccagtgatccg
aacctgcagaacattccggtgcgcaccgccgaaggccgacgcattcgtcaggcgttcgtc
gcaccgaagggttacaaactgctggcggcggactattcgcagatcgaactgcggatcatg
gcccacctgtcccgcgacgaaggcctgatgaacgcctttcgcaacaatctcgacgtgcac
actgcaaccgctgccgaagtattcaaggtcgagcttgatcaagtgacctcggaccagcgc
cgcagcgccaaggcgatcaacttcggtctgatctacggcatgggcgcgcagaagctcggc
aaggacatcggcgtcgacaccaagaccgccaaggcttacatcgacacctacttcgcccgt
tatccaggcgtgcgcgaatacatggagcgtacccgcgcgcaagcggcggatcagggttac
gtcgaaactttcttcggtcgtcgcctgtacttgccggagatcaactcgaacaagccgcag
gaacgcgccgctgcagaacgcacagcgatcaacgcgccgatgcagggcacggcagcggac
atcatcaagaaagcgatggtggctgtggataactggctggccacgtcggggctggatgcc
cgggtcatcctgcaagtgcacgacgaactggtgctggaggttcgcgaggatctggtcgag
caggtcagtgccgaaattcgtacgcacatgagcgaagcggcgaaactggatgtgccgctg
ctggtggaagttggcgtgggcaacaactgggatgaggcgcactga
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