Pseudomonas siliginis: NF676_03360
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Entry
NF676_03360 CDS
T08569
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
psii
Pseudomonas siliginis
Pathway
psii03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psii00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NF676_03360 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psii03019
]
NF676_03360 (rnr)
03016 Transfer RNA biogenesis [BR:
psii03016
]
NF676_03360 (rnr)
Enzymes [BR:
psii01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
NF676_03360 (rnr)
Messenger RNA biogenesis [BR:
psii03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NF676_03360 (rnr)
Transfer RNA biogenesis [BR:
psii03016
]
Prokaryotic type
tRNA degradation factors
NF676_03360 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
TRAM
OB_Dis3
TRAM_2
SRP-alpha_N
Motif
Other DBs
NCBI-ProteinID:
UST80373
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All DBs
Position
637807..640437
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AA seq
876 aa
AA seq
DB search
MADWQSLDPEAAREAEKYENPIPSRELILAHLADRGSPAAREQLVEEFGLTTEDQIEALR
RRLRAMERDAQLIYTRRGTYAPVDKLDLILGRISGHRDGFGFLVPDDGSDDLFMSPAQMR
LVFDGDRALARVSGLDRRGRREGVIVEVVSRAHETIVGRYFEEGGIGFVVADNPKIQQEV
LVTPGRNANAQIGQFVEVKITHWPTPRFQPQGDVVEVVGNYMAPGMEIDVALRTYDIPHV
WPEAVVKEAAKLKPEVEEKDKEKRIDLRHLPFVTIDGEDARDFDDAVYCEAKPGKLRLFS
GGWKLYVAIADVSSYVKIGSALDNEAQVRGNSVYFPERVIPMLPEQLSNGLCSLNPQVDR
LAMVCEMTISKSGEMTDYCFYEAVIHSHARLTYNKVSAMLETPKATEARKLRGEYTDVVP
HLKQLYALYKVLLAARHVRGAIDFETQETRIIFGSERKIAEIRPTVRNDAHKLIEECMLA
ANVATAEFLKKHEIPALYRVHAGPPPERLEKLRAFLGELGLSLHKGKDGPSPKDYQALLA
SIKDRPDFHLIQTVMLRSLSQAVYSAENDGHFGLNYEAYTHFTSPIRRYPDLLTHRAIRS
VIHSKQDTPHVRRAGAMTIPKARIYPYDEAALEQLGEQCSMSERRADEATRDVVNWLKCE
FMKDRVGESFPGVITAVTGFGLFVELTDIYVEGLVHVTALPGDYYHFDPVHHRLAGERTG
RSFRLGDTVEVRVMRVDLDERKIDFEMAEKTISAPIGRKKRGAETAAPAAKAAEEKAPAK
TASRRPAKEKVAEAYRPSDAVAKNAELRKSRELKKALLADAKNGGKAASGGKTGRSAPDR
ATDGKPAKPSKHRKGPPKAGSAPAKSGGARKPKAKS
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atggccgattggcagtccctcgatcccgaggccgctcgtgaagcggaaaaatacgaaaac
cctattcccagccgcgaactgatcctggcgcacctcgccgatcggggttcgcctgctgcc
cgcgagcaactggtcgaagagtttggtctgaccaccgaagaccagatcgaggccctgcgc
cgccgcttgcgcgcaatggagcgcgacgctcaactgatctacacccgccgtggcacttac
gcgccggtggacaagctcgacctgatcctcggccgcatcagcggtcaccgtgacggtttc
ggcttcctggttccggacgacggcagcgacgacctgttcatgagcccggcgcaaatgcgt
ctggtgttcgatggtgaccgtgcgctggcccgggtttccgggctcgaccgtcgtggtcgc
cgtgaaggcgtgatcgtcgaagtggtttcccgcgctcacgaaaccatcgtcggccgctac
ttcgaagaaggcggcatcggtttcgtcgttgccgacaatccgaagatccagcaggaagtg
ctggtcaccccgggccgcaacgccaatgcgcagatcggtcagttcgtcgaggtgaaaatc
acccactggccaacgccgcgtttccagccgcaaggcgatgtggtcgaagtggtcggcaac
tatatggcgccgggcatggaaatcgacgttgctctgcgcacgtacgatattccgcacgtc
tggcctgaggcggttgtgaaagaagccgccaagctcaagccggaagtcgaagaaaaagac
aaagaaaagcgcatcgacctgcgtcatctgccgttcgtcaccatcgacggcgaagacgcc
cgcgacttcgacgatgcggtctactgcgaagccaaaccgggcaagctgcgtctgttctcc
ggtggctggaagttgtacgtggcgattgccgacgtttccagttacgtgaagatcggctcg
gcgctggacaacgaagctcaggttcgcggcaactcggtgtacttccccgagcgcgtgatt
ccgatgctgcccgagcaactgtccaacggcctgtgctcgctgaacccgcaagtcgatcgt
ctggccatggtttgcgagatgaccatctccaagtccggcgaaatgaccgactactgcttc
tatgaggcggtgatccattcccacgcccgtctgacctacaacaaggtcagcgcgatgctg
gaaacgccgaaggctaccgaagcgcgcaaattgcgcggcgagtacaccgacgtcgtgccg
cacctcaagcagctctacgcgttgtacaaggtattgctcgccgcccgtcatgtgcgtggc
gcgatcgatttcgaaacccaggaaacacggatcatcttcggctccgagcgcaagatcgcg
gaaatccgtccgaccgtgcgcaacgatgcgcacaagctgatcgaggagtgcatgctggcc
gccaacgtggccactgccgaattcctcaagaagcacgaaattcctgcgctgtatcgcgtt
cacgccggtccgccgccagagcgtctggaaaagctgcgcgcattccttggtgagctcggc
ctgtccctgcacaaaggcaaggacggtccgtcgccgaaggattatcaggccctgctggcg
agcatcaaggatcgtccggatttccatctgatccagaccgtcatgctgcgttcgttgagt
caggcggtgtacagcgctgaaaacgacggccacttcggcctgaattacgaagcctatacc
cacttcacttcgccgatccgtcgttatccggacctgctcacgcaccgcgcgatccgcagc
gtgatccattcgaaacaggacaccccgcacgttcgtcgtgccggtgcgatgaccattccg
aaagcgcgcatctatccgtacgacgaagcggcgctggagcagcttggcgagcagtgctcg
atgagcgagcgtcgtgccgacgaagcgacccgtgacgtggtgaactggctcaagtgcgag
ttcatgaaggatcgcgtgggcgaatcgttcccgggcgtaatcaccgctgttaccggtttt
ggtctgttcgtcgagctgaccgatatctacgtcgaaggcctggtgcatgtcaccgcgctg
ccgggcgattactaccacttcgatcctgtgcatcaccgcttggcgggcgagcgcaccggt
cgcagtttccgtcttggcgacaccgttgaagtacgcgtcatgcgcgtcgaccttgatgag
cgcaagattgacttcgagatggccgagaaaaccatcagcgcgccgatcggtcgcaagaaa
cgtggcgccgaaaccgctgcgcctgctgccaaggctgcggaagaaaaggctccagcgaaa
accgccagccgtcgtccggccaaggaaaaggttgccgaagcctatcgtccgagcgatgcc
gtggcgaaaaacgccgagctgcgcaaaagccgtgaattgaagaaggccttgctggccgat
gcgaaaaacggtggtaaagcggcgtccgggggaaagaccggacggtcggcgcctgacagg
gcgaccgacggcaagccagccaagccgagcaaacaccgtaagggcccgccaaaagcgggt
tccgctccagccaaaagtggcggggcgcgtaaaccgaaggcgaagtcatga
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