Pseudomonas siliginis: NF676_04160
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Entry
NF676_04160 CDS
T08569
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
psii
Pseudomonas siliginis
Pathway
psii03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psii00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
NF676_04160 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psii03400
]
NF676_04160 (recD)
Enzymes [BR:
psii01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
NF676_04160 (recD)
DNA repair and recombination proteins [BR:
psii03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
NF676_04160 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
RecD_N
AAA_30
UvrD_C_2
AAA_11
Helicase_RecD
SH3_13
AAA_22
Viral_helicase1
UvrD-helicase
SLFN-g3_helicase
AAA_16
AAA_17
AAA_28
nSTAND3
TraI_hel_assoc_N
AAA_5
PhoH
T2SSE
NTPase_1
NACHT
AAA
Motif
Other DBs
NCBI-ProteinID:
UST80523
LinkDB
All DBs
Position
840186..842294
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AA seq
702 aa
AA seq
DB search
MSRTFADLLPTPLEADSLSKLSPLTRADDLLLLLSRWVERGWLRALDRAFVAFLHELEPE
TDPLVLLAAALTSHQLGHGHVCLDLFETLKAPDFALSLPPEGDVQGGVLLLPSQLLETLD
GAHWCKVLASSPLVALAADPSETAQTRPLVLSSKRLYLRRYWTYERRIDAALRQRLMQQE
PTPDDLPQRLNELFGGAESAAVIDWQKLACAIATRSAFSIITGGPGTGKTTTVVRLLALL
QAPAVEAGHPLRIRLAAPTGKAAARLTESISQQVQSLQVAEAVRAAIPSDVTTVHRLLGS
RPGTRHFRHHAGNRLPLDVLVVDEASMIDLEMMANLLDAMPAHARLVLLGDKDQLASVEA
GAVLGDLCRDAEGGWYSPQTRQWLESVSGESLQGSGLHEDRDGTHPLAQQVVMLRHSRRF
GEGSGIGQLARRVNQQLADEARQLLAAGGYDDVYSLPLKGEHDLKLERLLLEGHGNGPQG
YRHYLSVLRDQRPPSTRPLEHAAWTDWAREVLQAFDTFQLLCAVRKGPWGVEGLNQRITA
ALLKARLIESDQQWYEGRPVLMTRNDYGLGLMNGDIGIALKLPEREGAEIGKTVLRVAFP
RNDGQGGVRFVLPSRLNDVETVYAMTVHKSQGSEFAHTALILPDALNPVLTKELIYTGIT
RARHWFTLIEPRAGVFEEAVLRKVKRLSGLMLELEEGAESQG
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcacattcgccgatctgctgccgacgccgctggaagcggacagcctgtcgaaa
ctctcgccgctgacccgcgccgatgatttgctgttgttgctgagccgttgggtcgagcgc
ggctggctgcgcgcgctggaccgcgcctttgtcgcgttcctgcatgaactcgagcccgag
accgatccgctggtgttgctcgcggcggcgttgaccagtcaccaactcggccatggtcat
gtgtgtctggacctgtttgaaaccctcaaggcgccggattttgcactgtcattgccgccc
gaaggcgacgtgcagggcggtgtgttgttgctgccctcgcaattgctcgaaacgctcgat
ggagcccattggtgcaaagtgctggcaagcagtccattggtggccctggccgctgacccg
agtgaaacagcgcagacacgtccgctggtgctgtcctcgaaacgcttgtacctgcgccgc
tactggacctacgaacgccgcatcgatgcagcgttgcgccaacgcttgatgcagcaggag
ccgacgccggatgatctgccgcagcgtctgaacgaattgttcggcggcgcggaatccgca
gctgtcatcgattggcaaaaactcgcctgcgccatcgcaacgcgcagcgccttcagcatc
atcactggcggcccgggcaccgggaaaaccactacggtggtgcgcttgctcgcgttgctg
caggcaccggccgtcgaggctggccatccgctgcgcattcgtctggccgcaccgaccggc
aaggccgctgcgcgtttgaccgagtcgatcagtcagcaagtgcaatcactgcaagtcgcc
gaagcggtgcgcgcggcgatccccagcgatgtgaccaccgtgcaccgtctgctcggcagt
cgaccgggcacccggcatttccgtcaccatgccggcaaccgcctgccgctggatgtgctg
gtggtcgatgaagcgtcgatgatcgacctggaaatgatggcgaacttgctcgacgccatg
ccggcccatgctcggctggtgctgctgggcgacaaggatcagttggcctcggtcgaggcc
ggtgcggtactgggcgatctgtgccgtgacgccgagggcggttggtacagcccgcaaacg
cgacaatggctggagtctgtcagtggcgagtcgttgcagggcagcggtttgcatgaagat
cgcgacggcacccatccgttggcgcaacaagtggtgatgctgcgtcactcgcgccgcttc
ggcgagggcagcggtatcggtcagcttgcgcgccgggtcaatcagcaattggccgacgag
gcgcgacagttgctcgccgctggcggctacgacgacgtgtattcgctgccgctcaaaggc
gagcacgatctcaagctcgaacgtctgctgctcgaaggtcacggcaacggcccgcaaggt
taccgccattacctgagcgtactgcgcgatcagcgtccaccgtcgacgcggccccttgag
catgcggcctggaccgattgggcgcgggaagtcttgcaggcgttcgacacgttccagttg
ctgtgcgccgtgcgcaaagggccatggggcgttgaaggtctgaaccagcgcatcaccgct
gcgttgctcaaggcgcgtctgatcgagagcgatcagcagtggtatgaaggtcggccggtg
ctgatgacacgcaacgactatggtctgggcctgatgaacggtgacatcggtatcgccctg
aaactgcccgagcgtgaaggcgcagaaatcggcaaaacggttctgcgcgtggccttcccg
cgtaacgatggtcagggcggcgtgcgcttcgtgttgccgagtcgactcaatgatgtcgaa
accgtgtacgccatgacggtgcacaagtcccagggttcggagttcgcccacacggcgctg
atcctgccggatgcgctgaatccggtactgaccaaagagttgatctacaccgggattact
cgcgcccggcactggttcaccttgatcgagccgcgtgccggcgtgtttgaagaggcggtg
ctgcgcaaggtgaagcggctgagcgggctgatgctggagctggaggagggtgccgagtct
cagggatga
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